These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1142 fasta sequence [AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGACTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGATGCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTCATCACACACGCAACGACAAATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAACAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGACGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACAAGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCAATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAATACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCATCATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATGCGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGAATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTGATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGAAAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACAAAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAGTTA] [+] EMBL CD118464 [AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGACTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGATGCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTCATCACACACGCAACGACAAATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAACAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGA ] [+] EMBL CD121633 [ AAGATTCTCCGATACAACACAACATGCACCAATCGAATTACACTTGACGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACAAGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCAATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAATACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCATCATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCT ] [+] EMBL CD096407 [ GTTGTCTACGTAAGATACTTCGGATCCGTTGGCCAGACACTACCAGCAACAAGCTACTGTGGGAGACAACAAACCAGATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATGCGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGAATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTGATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGAAAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACAAAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAGTTA] consensusID : consensus_6301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAATGCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGATGGAGAAGCTTTGGAAGA] [+] EMBL CD188565 [GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAATGCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGATGGAGAAGCTTTGGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6301#0 AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGA 60 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 CTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGAT 120 consensus_6301#1 --GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAAT 58 ************************** ** ****** ***************** ** consensus_6301#0 GCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTC-ATCACACACGCAACGACA 179 consensus_6301#1 GCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACA 118 ********** ****************************** ****** ******* *** consensus_6301#0 AATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAA 239 consensus_6301#1 AATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAA 178 *********** **** *** ****************** ****************** consensus_6301#0 CAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGA 299 consensus_6301#1 CAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGA 238 ***** ****** ********************** ************************ consensus_6301#0 CGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACA 359 consensus_6301#1 TGGAGAAGCTTTGGAAGA------------------------------------------ 256 *********** ** ** consensus_6301#0 AGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCA 419 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 ATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAA 479 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 TACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCAT 539 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 CATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATG 599 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 GCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGA 659 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 AGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATG 719 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 CGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAA 779 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 GAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGA 839 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 ATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTC 899 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 CATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTG 959 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 ATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGA 1019 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 AAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACA 1079 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 AAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAG 1139 consensus_6301#1 ------------------------------------------------------------ consensus_6301#0 TTA 1142 consensus_6301#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||