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Schistosoma mansoni
cluster # 6301 cluster # 6301       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6301#0 length = 1142 sequences # 3  
consensus_6301#1 length = 256 sequences # 1  

consensusID : consensus_6301#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1142
fasta sequence
                              [AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGACTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGATGCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTCATCACACACGCAACGACAAATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAACAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGACGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACAAGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCAATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAATACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCATCATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATGCGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGAATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTGATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGAAAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACAAAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAGTTA]

[+] EMBL CD118464             [AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGACTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGATGCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTCATCACACACGCAACGACAAATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAACAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD121633             [                                                                                                                                                                                                                                                            AAGATTCTCCGATACAACACAACATGCACCAATCGAATTACACTTGACGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACAAGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCAATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAATACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCATCATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATGGCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD096407             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTTGTCTACGTAAGATACTTCGGATCCGTTGGCCAGACACTACCAGCAACAAGCTACTGTGGGAGACAACAAACCAGATTCCAGCAGAGGAAGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATGCGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGAATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCCATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTGATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGAAAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACAAAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAGTTA]


>consensus_6301#0 AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGA CTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGAT GCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTCATCACACACGCAACGACAA ATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAAC AAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGAC GGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACAA GTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCAA TTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAAT ACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCATC ATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATGG CCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGAA GAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATGC GTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAAG AACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGAA TTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTCC ATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTGA TACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGAA AAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACAA AGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAGT TA



consensusID : consensus_6301#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence
                              [GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAATGCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGATGGAGAAGCTTTGGAAGA]

[+] EMBL CD188565             [GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAATGCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACAAATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGATGGAGAAGCTTTGGAAGA]


>consensus_6301#1 GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAATGC AGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACAAA TGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAACA AAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGATG GAGAAGCTTTGGAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6301#0      AAAGACCGATGCCAGGCAAGGTTGCTTACTCTCACCCTTTTTCTTTCTCCTGGTGATCGA 60
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      CTGGATCATGAAGACGTCAACATCTGGAGGAGTGCACGGGATACAGTGGACAGGCAGGAT 120
consensus_6301#1      --GGATCATGAAGACGTCAACATCTGGAAGAAAGCACGGAATACAGTGGACAGGCAGAAT 58
                        ************************** **  ****** ***************** **

consensus_6301#0      GCAGCTTGACGATTTAGACTTCGCAGATGATCTGGCTCTTC-ATCACACACGCAACGACA 179
consensus_6301#1      GCAGCTTGACAATTTAGACTTCGCAGATGATCTGGCTCTTCTATCACAAACGCAACAACA 118
                      ********** ****************************** ****** ******* ***

consensus_6301#0      AATGCAGGAGACGACGACCAGCATAGCAGCAGCCTCAGCAGTAGTAGGTCTCAATATAAA 239
consensus_6301#1      AATGCAGGAGAAAACGATCAGAGTAGCAGCAGCCTCAGCAGCAGTAGGTCTCAATATAAA 178
                      ***********  **** ***  ****************** ******************

consensus_6301#0      CAAAGGGAAAAGAAAGACTCTCCGATACAATACAACATGCACCAATCAAATTACACTTGA 299
consensus_6301#1      CAAAGAGAAAAGCAAGACTCTCCGATACAATACAATATGCACCAATCAAATTACACTTGA 238
                      ***** ****** ********************** ************************

consensus_6301#0      CGGAGAAGCTTTAGAGGATGTAAAAACCTTTACATATATTGGGGACATCGTTACTGAACA 359
consensus_6301#1      TGGAGAAGCTTTGGAAGA------------------------------------------ 256
                       *********** ** **                                          

consensus_6301#0      AGTTGGATCTGATGCAAATGTGAAGGCTCGGATCAGCAAAGCAAAAGCAGCATACCTGCA 419
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      ATTGAAGATCATCTGGAACTCAAAACAATTGTCAACCAACATCAAGATCAGAATTTTCAA 479
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      TACCAATGTCAAGACAGTCCTACTGTATGTGGCGGAAACTTGTAGAACTACGAAAACCAT 539
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      CATCTAGAAGATACAGGTGTTTATGAACAGTTGTCTGCGCAAAATACTTCGGATCCGATG 599
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      GCCAGACACTATCAGCAACAAGTTACTGTGGGAGACAACAAACCACATTCCAGCAGAGGA 659
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      AGAAATCAGGAAGAAGCGCTGGAAGTGGATAGGACACACTTTGAGGAAATCACCCAAATG 719
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      CGTCACAAGACAAGCCCTCACATGGAGTCCTGAAGGTCAAAGAAGAAGAGGAAGACCAAA 779
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      GAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACGAAAGTTGGATAGA 839
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      ATTAGAAAGAAAGGCCCAGGACAGAGTGGGTTGGAGAATGCTGGTCGGTGGCCTATGCTC 899
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      CATCGGGAGTAACAGGCGTAAGTAAGCAATGTCAGTTAGTCATATACAATCTAGAACTTG 959
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      ATACATTTATGCATTAGTTCAGATTGTCACATGATATTAATACAGCGATTTATTTCAGGA 1019
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      AAAATTTCTAGAGTGGTAGAATTAATAACAGTATCTATAATAATAGGAAAAAAACGTACA 1079
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      AAGAAATTTTGGCACTCAGGTTATGAGACAAAGAGTGAATGCACTGTGAACGATTTTGAG 1139
consensus_6301#1      ------------------------------------------------------------
                                                                                  

consensus_6301#0      TTA 1142
consensus_6301#1      ---
                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)