These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 608 fasta sequence [GAATCATGAGTTTTCTGCTTTTAATCTTACTACATACTTGTATGTGAGGACCTAAAGGAACTAGTGTTCTAGCTAGTGTAGCTCGGTTCGGTTATCACCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGATCCAATCAGGCTATGCTGGCTGGAACAATCGTTCCTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAAAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACCGCCGACTGTACAGAGGTGTGACGGCAGTGAAGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAATTAGGAGTGGGGTTAGAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGCGGTAAGGTCCTTTGAAGAACGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGCCGTGCGTGACCAGCCTCAAGCTGTTGTCCATTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAATTTCCTTTTCAGGTCCCTCAAGAAATACCCTTCCACGGTGTGGGCAGCCGGGAAGTGAAATAAGCCCTCAT] [-] EMBL CD189555 [GAATCATGAGTTTTCTGCTTTTAATCTTACTACATACTTGTATGTGAGGACCTAAAGGAACTAGTGTTCTAGCTAGTGTAGCTCGGTTCGGTTATCACCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGATCCAATCAGGCTATGCTGGCTGGAACAATCGTTCCTCAAGGT ] [+] EMBL CD096711 [ TGCTGCTACCTTGACGTGGTGGTCGGGCTTGCTTATCGTGATGAACCAATCGGGCTATGCTGGCTGGAACAATCGTTCCTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAAAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACCGCCGACTGTACAGAGGTGTGACGGCAGTGAAGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAATTAGGAGTGGGGTTAGAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGCGGTAAGGTCCTTTGAAGAACGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGCCGTGCGTGACCAGCCTCAAGCTGTTGTCCATTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAA ] [-] EMBL CD061470 [ CAAGCAGTTGTCCCTTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAATTTCCTTTTCAGGTCCCTCAAGAAATACCCTTCCACGGTGTGGGCAGCCGGGAAGTGAAATAAGCCCTCAT] consensusID : consensus_6306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence [GAAAGATTTGAAAGTGATCAACTTGGTCTCGTGTGCAGTTAAGGGTATGAGGGCTAGTATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTGAGGGACCCTGAAAAAGAAGTTGGATTATTGTTGGTCTGAACGACCTGGGGG] [+] EMBL CD114339 [GAAAGATTTGAAAGTGATCAACTTGGTCTCGTGTGCAGTTAAGGGTATGAGGGCTAGTATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTGAGGGACCCTGAAAAAGAAGTTGGATTATTGTTGGTCTGAACGACCTGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6306#0 GAATCATGAGTTTTCTGCTTTTAATCTTACTACATACTTGTATGTGAGGACCTAAAGGAA 60 consensus_6306#1 ------------------------------GAAAGATTTGAAAGTGATCAACTT---GGT 27 * * * *** * **** * ** * consensus_6306#0 CTAGTGTTCTAGCTAGTGTAGCTCGGTTCGGTTATCACCGTTGCTGCTACCTTGACGTGG 120 consensus_6306#1 CTCGTGTGCAGTTAAGGGTATGAGGGCTAGTATCACTTCCCGGCTGCCCACACCGTGGAA 87 ** **** * ** *** ** * * * * * ***** * * consensus_6306#0 TGGTCGGGCTTGCCT-ATCGTGATGATCCAATCAGGCTAT-GCTGGCTGGAACAATCGTT 178 consensus_6306#1 GGGTATTTCTTGAGGGACCCTGAAAAAGAAGTTGGATTATTGTTGGTCTGAACGA----- 142 *** **** * * *** * * * * *** * *** **** * consensus_6306#0 CCTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAAAGCGGTAAGACTAAAAGCAGCAA 238 consensus_6306#1 CCTGGGGG---------------------------------------------------- 150 *** ** consensus_6306#0 TCCCAAGGTCCGAAGGCGAAGTCGTACCGCCGACTGTACAGAGGTGTGACGGCAGTGAAG 298 consensus_6306#1 ------------------------------------------------------------ consensus_6306#0 TTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAATTAGGAGTGGGGTTA 358 consensus_6306#1 ------------------------------------------------------------ consensus_6306#0 GAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGCGGTAAGGTCCTTTGAA 418 consensus_6306#1 ------------------------------------------------------------ consensus_6306#0 GAACGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGCCGTGCGTGACCAGCCTCAAGC 478 consensus_6306#1 ------------------------------------------------------------ consensus_6306#0 TGTTGTCCATTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAAT 538 consensus_6306#1 ------------------------------------------------------------ consensus_6306#0 TTCCTTTTCAGGTCCCTCAAGAAATACCCTTCCACGGTGTGGGCAGCCGGGAAGTGAAAT 598 consensus_6306#1 ------------------------------------------------------------ consensus_6306#0 AAGCCCTCAT 608 consensus_6306#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||