cluster # 6309

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Schistosoma mansoni
cluster # 6309 cluster # 6309 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6309#0 length = 603 sequences # 3

consensus_6309#1 length = 326 sequences # 1

consensusID : consensus_6309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 603
fasta sequence

                              [GGAACTGACATGACAGGTTTCGTCACAGGAGTTGTGATTGAACGTGTTGTATTTGGCGCCATAAAAACACGAGAGATGATGGGTTGTTGAACGACCGAAACTGGGCGTGTAGTAGACTGTGTAAGAAGTGATGGCAATAAGCCTGACGAAACTGTTGTATTTCCCTTTGATACATTTGGACTATCAATACACACTGGAACTTGATTAACAGAACTAATGGATGTTAATGCTAGAGGCGATCCAGAAGATAAAATTTGATGTGAATGATCACTTATTGAGTGAATTTCTAATTCCGAATTGTTCACAACATAAGTGTTTTCTAAGGACTGATTAGATTCACCGAGCGATTGTGGATTGTTACCAGACAAAACAGAGCATATTCCAGTTGCTAACACATCTCCATCATGGCCAATATCTAAGTCTGATAACGACCTGCTATATACAGTAT-TTGTAACCACCGAAGGCGATGTGAAGACAAACGGGCTATTATCAGAACCTGTAACTAACATAGTTGGTGATGCATTACTANGTGCTGCGGNTGTAGAAGTATGAGTGGGTTTTGTTCTTAGCACTTGCATTGGTCTAACAGGAGATTTTCGTCGA]

[+] EMBL CD179050             [GGAACTGACATGACAGGTTTCGTCACAGGAGTTGTGATTGAACGTGTTGTATTTGGCGCCATAAAAACACGAGAGATGATGGGTTGTTGAACGACCGAAACTGGGCGTGTAGTAGACTGTGTAAGAAGTGATGGCAATAAGCCTGACGAAACTGTTGTATTTCCCTTTGATACATTTGGACTATCAATACACACTGGAACTTGATTAACAGAACTAATGGATGTTAATGCTAGAGGCGATCCAGAAGATAAAATTTGATGTGAATGATCACTTATTGAGTGAATTTCTAATTCCGAATTGTTCACAACATAAGTGTTTTCTAAGGACTGATTAGATTCACCGAGCGATTGTGGATTGTTACCAGACAAAGCAGAGCATATTCCAGTTGCTAACACATCTCCATCATGGCCAATATCTAAGTCTGATAACGACCTGCTATATACAGTATNTTGTAACCACCG AGGCGATGTGAAGACNAACGGGCTATTATCAGAACCTGTAACTAACATAGTTGGTGATGCATTACTANGTGCTGCGGNTGTAGAAGTATGAGTGGGTTTTGTTCTTAGCACTTGCATTGGTCTAACAGGAGATTTTCGTCGA]
[+] EMBL CD196576             [                                                                                    TGTTGAACGACCGAAACTGGGCGTGTAGTAGACTGTGTAAGAAGTGATGGCAATAAGCCTGACGAAACTGTTGTATTTCCCTTTGATACATTTGGACTATCAATACACACTGGAACTTGATTAACAGAACTAATGGATGTTAATGCTAGAGGCGATCCAGAAGAT AAATTTGATGTGAATGATCACTTATTGAGTGAATTTCTAATTCCGAATTGTTCACAACATAAGTGTTTTCTAAGGACTGATTAGATTCACCGAGCGATTGTGGATTGTTACCAGACGAAACAGAGCATATTCCAGCTGCTAACACATCTCCATCATGGCCAATATCTAAGTCTGATAACGACCTGCTATATACAGTAT TTGTAACCACCGAAGGCGATGTGAAGACAAACGGGCTATTATC                                                                                                                ]
[-] EMBL CD064261             [                                                                                                                                                                                  cccatTCAATACACACTGGAACTTGATTAACAGAACTAATGGATGTTAATGCTAGAGGCGATCCAGAAGATAAAATTTGATGTGAATGATCACTTATTGAGTGAATTTCTAATTCCGAATTGTTCACAACATAAGTGTTTTCTAAGGACTGATTAGATTCACCGAGCGATTGTGGATTGTTACCAGACAAAACAGAGCATATTCCAGTTGCTAACACATCTCCATCATGGCCAATATCTAAGTCTGATAACGACCTGCTATATACAGTAT TTGTAACCACCGAAGGCGATGTGAAGACAAACGGGCTATTATCAGAACCTGTAACT ACATAGTTGGTGATGCA                                                                                 ]




>consensus_6309#0
GGAACTGACATGACAGGTTTCGTCACAGGAGTTGTGATTGAACGTGTTGTATTTGGCGCC
ATAAAAACACGAGAGATGATGGGTTGTTGAACGACCGAAACTGGGCGTGTAGTAGACTGT
GTAAGAAGTGATGGCAATAAGCCTGACGAAACTGTTGTATTTCCCTTTGATACATTTGGA
CTATCAATACACACTGGAACTTGATTAACAGAACTAATGGATGTTAATGCTAGAGGCGAT
CCAGAAGATAAAATTTGATGTGAATGATCACTTATTGAGTGAATTTCTAATTCCGAATTG
TTCACAACATAAGTGTTTTCTAAGGACTGATTAGATTCACCGAGCGATTGTGGATTGTTA
CCAGACAAAACAGAGCATATTCCAGTTGCTAACACATCTCCATCATGGCCAATATCTAAG
TCTGATAACGACCTGCTATATACAGTATTTGTAACCACCGAAGGCGATGTGAAGACAAAC
GGGCTATTATCAGAACCTGTAACTAACATAGTTGGTGATGCATTACTANGTGCTGCGGNT
GTAGAAGTATGAGTGGGTTTTGTTCTTAGCACTTGCATTGGTCTAACAGGAGATTTTCGT
CGA

consensusID : consensus_6309#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [CATTACTTGTTTCTGCGGTTGTAGAAGTATGAGTGGTTTTTGTTCTTAGCACTTGCATTGGTCTAACAGGAGATTTTCGTCGACTGCTACCTGAAGATGAATTACAAGACAACATTGCTCCAGTATCTGTCAATGTAGAGACTAATACGCCATCAGAACTGGTAGCAGTGTTTGAGCCCGTAATGATGGAAAGTTCTGGAGCAAGTAAATCCTCTTCCAGTTCCTCTTGAGACTGTTGAACTCGTCTATTAACGAGTCCACGCGATTCTGCAGACTCCAGATCATCTTCGTGTATAGCTGTTTTGTCTAAACTGGTTCTTAAATGT]

[+] EMBL CD112076             [CATTACTTGTTTCTGCGGTTGTAGAAGTATGAGTGGTTTTTGTTCTTAGCACTTGCATTGGTCTAACAGGAGATTTTCGTCGACTGCTACCTGAAGATGAATTACAAGACAACATTGCTCCAGTATCTGTCAATGTAGAGACTAATACGCCATCAGAACTGGTAGCAGTGTTTGAGCCCGTAATGATGGAAAGTTCTGGAGCAAGTAAATCCTCTTCCAGTTCCTCTTGAGACTGTTGAACTCGTCTATTAACGAGTCCACGCGATTCTGCAGACTCCAGATCATCTTCGTGTATAGCTGTTTTGTCTAAACTGGTTCTTAAATGT]




>consensus_6309#1
CATTACTTGTTTCTGCGGTTGTAGAAGTATGAGTGGTTTTTGTTCTTAGCACTTGCATTG
GTCTAACAGGAGATTTTCGTCGACTGCTACCTGAAGATGAATTACAAGACAACATTGCTC
CAGTATCTGTCAATGTAGAGACTAATACGCCATCAGAACTGGTAGCAGTGTTTGAGCCCG
TAATGATGGAAAGTTCTGGAGCAAGTAAATCCTCTTCCAGTTCCTCTTGAGACTGTTGAA
CTCGTCTATTAACGAGTCCACGCGATTCTGCAGACTCCAGATCATCTTCGTGTATAGCTG
TTTTGTCTAAACTGGTTCTTAAATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6309#0      GGAACTGACATGACAGGTTTCGTCACAGGAGTTGTGATTGAACGTGTTGTATTTGGCGCC 60
consensus_6309#1      ----------------------------------------CATTACTTGTTTCTGCGGTT 20
                                                               *    **** * **  *  

consensus_6309#0      ATAAAAACACGAGAGATGATGGGTTGTTGAACGACCGAAACTGGGCGTGTAGTAGACTGT 120
consensus_6309#1      GTAGAAGTATGAGTGGTTTTTGTTCTTAGC---ACTTGCATTGGTCTAACAGGAGATTTT 77
                       ** **  * *** * *  * * *  * *    **    * *** *    ** *** * *

consensus_6309#0      -GTAAGAAGTGATGGCAATAAGCCTGACGAAACTGTTGTATTTCCCTTTGATACATTTGG 179
consensus_6309#1      CGTCGACTGCTACCTGAAGATGAATTACAAGACA-----ACATTGCTCCAGTAT------ 126
                       **     *  *    ** * *  * ** * **      *  *  **    **       

consensus_6309#0      ACTATCAATACACACTGGAACTTGATTAACAGAACTAATGGATGTTAATGCTAGAGGCGA 239
consensus_6309#1      -CTGTCAATGTAGAGACTAATACG-CCATCAGAACTGGTAG----CAGTGTTTGAGCCCG 180
                       ** *****  * *    **   *   * *******  * *     * ** * *** *  

consensus_6309#0      TCCAGAAGATAAAATTTGATGTGAATGATCACTTATTGAGTGAATTTCTAATTCCGAATT 299
consensus_6309#1      TAATGATGGAAAGTTCTGGAGCAAGTAAATCCTCTTCCAGT----TCCT--CTTGAGACT 234
                      *   ** *  **  * **  *  * * *   **  *  ***    * **   *    * *

consensus_6309#0      GTTCACAACATAAGTGTTTTCTAAGGACTGATTAGATTCACCGAGCGATTGTGGATTGTT 359
consensus_6309#1      GTTGAACTCGT-----CTATTAACGAGTCCACGCGATTCTGCA---GACTCCAGATCATC 286
                      *** *   * *      * *  * *     *   *****  *    ** *   ***  * 

consensus_6309#0      ACCAGACAAAACAGAGCATATTCCAGTTGCTAACACATCTCCATCATGGCCAATATCTAA 419
consensus_6309#1      TTCGTGTATAGCTGTTTTGTCTAAACTGGTTCTTAAATGT-------------------- 326
                        *    * * * *       *  * * * *   * ** *                    

consensus_6309#0      GTCTGATAACGACCTGCTATATACAGTATTTGTAACCACCGAAGGCGATGTGAAGACAAA 479
consensus_6309#1      ------------------------------------------------------------
                                                                                  

consensus_6309#0      CGGGCTATTATCAGAACCTGTAACTAACATAGTTGGTGATGCATTACTANGTGCTGCGGN 539
consensus_6309#1      ------------------------------------------------------------
                                                                                  

consensus_6309#0      TGTAGAAGTATGAGTGGGTTTTGTTCTTAGCACTTGCATTGGTCTAACAGGAGATTTTCG 599
consensus_6309#1      ------------------------------------------------------------
                                                                                  

consensus_6309#0      TCGA 603
consensus_6309#1      ----