cluster # 6313

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Schistosoma mansoni
cluster # 6313 cluster # 6313 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6313#0 length = 515 sequences # 1

consensus_6313#1 length = 463 sequences # 2
consensus_6313#2 length = 310 sequences # 1

consensusID : consensus_6313#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [TTTACAGGTTGGCAGCCCGGGTTCCGATGGAGTTCAAATTGTACGCACTATACCTTCTTTTGTCAGTTCTACTACTCAAATAATTTCATTTCCAACTGTTGCAACACAACAACCAGTCGCAGCCCAGTCAAGCAATCCTAGACAACAAATTCAGCAACAACAAAAGATATGTTACAATTAAAAATTATTAATTTTCAACAATTACCAGAAATTCAACCAAGAGTTATTAACGGCAACCATAACAATAATAATACGAACGCAAATCTCAACCACAGTAATAACAATACCAAAATGATGAATCGAACTAGTTTTGTACGTGCTGATCTTAGACGACGTAATACACAACGTTCTACAAGTGTTGATATGGCAAGGATTAATCGACCGCTGAGTATTGATAATAATATAATGGCTAATAATCATAAAATTACTACTAATACTACTAATACTACTACTAACAGTGATTATAACAGTGGTAGTAGTACTAATAATGACCAAGTTACCAATACTAACTACAA]

[+] EMBL CD187662             [TTTACAGGTTGGCAGCCCGGGTTCCGATGGAGTTCAAATTGTACGCACTATACCTTCTTTTGTCAGTTCTACTACTCAAATAATTTCATTTCCAACTGTTGCAACACAACAACCAGTCGCAGCCCAGTCAAGCAATCCTAGACAACAAATTCAGCAACAACAAAAGATATGTTACAATTAAAAATTATTAATTTTCAACAATTACCAGAAATTCAACCAAGAGTTATTAACGGCAACCATAACAATAATAATACGAACGCAAATCTCAACCACAGTAATAACAATACCAAAATGATGAATCGAACTAGTTTTGTACGTGCTGATCTTAGACGACGTAATACACAACGTTCTACAAGTGTTGATATGGCAAGGATTAATCGACCGCTGAGTATTGATAATAATATAATGGCTAATAATCATAAAATTACTACTAATACTACTAATACTACTACTAACAGTGATTATAACAGTGGTAGTAGTACTAATAATGACCAAGTTACCAATACTAACTACAA]




>consensus_6313#0
TTTACAGGTTGGCAGCCCGGGTTCCGATGGAGTTCAAATTGTACGCACTATACCTTCTTT
TGTCAGTTCTACTACTCAAATAATTTCATTTCCAACTGTTGCAACACAACAACCAGTCGC
AGCCCAGTCAAGCAATCCTAGACAACAAATTCAGCAACAACAAAAGATATGTTACAATTA
AAAATTATTAATTTTCAACAATTACCAGAAATTCAACCAAGAGTTATTAACGGCAACCAT
AACAATAATAATACGAACGCAAATCTCAACCACAGTAATAACAATACCAAAATGATGAAT
CGAACTAGTTTTGTACGTGCTGATCTTAGACGACGTAATACACAACGTTCTACAAGTGTT
GATATGGCAAGGATTAATCGACCGCTGAGTATTGATAATAATATAATGGCTAATAATCAT
AAAATTACTACTAATACTACTAATACTACTACTAACAGTGATTATAACAGTGGTAGTAGT
ACTAATAATGACCAAGTTACCAATACTAACTACAA

consensusID : consensus_6313#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 463
fasta sequence

                              [TAAGACGTGACCAGCCAGAAGTTTAAACCCAACGAGTTTGTCGTTGGTAAATACTCTTCTGATAGCTTGTTTCGTTTAGCTGTCGATTATAAATTCATCTTTCTGCTTAATCACTATCAACTAACTACTATCAGAAACTATCTACTAGAATAATTTACTTTCTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACGAATGCTAGAAATTTACGGTGAGTTTGAACTATAAATTTCCTGCAATGTTATATCTTGTTTAAACTGTTTCGCCAGGCAAGGTTACGTGTTTGGCTCAAATTAAATTTGGACGCATACCATTTCAGTGTACAACGCTTCGTTAATTTATTAATTTCAGCAGCAGATTTCAATTACTTGGGAGCAAGAGTAATCCAGGCGAGCTTCATAACTGTGTCAAATCCATTTGTATAATGTTTATGATGT]

[+] EMBL CD133548             [TAAGACGTGACCAGCCAGAAGTTTAAACCCAACGAGTTTGTCGTTGGTAAATACTCTTCTGATAGCTTGTTTCGTTTAGCTGTCGATTATAAATTCATCTTTCTGCTTAATCACTATCAACTAACTACTATCAGAAACTATCTACTAGAATAATTTACTTTCTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACGAATGCTAGAAATTTACGGTGAGTTTGAACTATAAATTT                                                                                                                                                                                                             ]
[-] EMBL CD060791             [                                                                                                                                                                                        CCAATTGGTGAGTTCCATGGCGAATCAGAGGATACAAATGCTATAAATTTGCGGTGAGTTTGAACCATAAATTTCCTGCAATGTTATATCTTGTTTAAACTGTTTCGCCAGGCAAGGTTACGTGTTTGGCTCAAATTAAATTTGGACGCATACCATTTCAGTGTACAACGCTTCGTTAATTTATTAATTTCAGCAGCAGATTTCAATTACTTGGGAGCAAGAGTAATCCAGGCGAGCTTCATAACTGTGTCAAATCCATTTGTATAATGTTTATGATGT]




>consensus_6313#1
TAAGACGTGACCAGCCAGAAGTTTAAACCCAACGAGTTTGTCGTTGGTAAATACTCTTCT
GATAGCTTGTTTCGTTTAGCTGTCGATTATAAATTCATCTTTCTGCTTAATCACTATCAA
CTAACTACTATCAGAAACTATCTACTAGAATAATTTACTTTCTTGACCACTGCCTGCCTA
ATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACGAATGCTAGAAATTTACGGTG
AGTTTGAACTATAAATTTCCTGCAATGTTATATCTTGTTTAAACTGTTTCGCCAGGCAAG
GTTACGTGTTTGGCTCAAATTAAATTTGGACGCATACCATTTCAGTGTACAACGCTTCGT
TAATTTATTAATTTCAGCAGCAGATTTCAATTACTTGGGAGCAAGAGTAATCCAGGCGAG
CTTCATAACTGTGTCAAATCCATTTGTATAATGTTTATGATGT

consensusID : consensus_6313#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [TCAGTAAGGAGCGGAGCCAGACAAGGCTGTCTACTCTCCCTCTTCCTCTTTCTTCTAGTGATTGGCTGGATTATGAAAACCACAACATCTGAGGGGAAGCACGGAATACAATCGACATCTCAGAATCAATTAGATGATTTGGACTTCGCAGATCACTTATCCATCCTATACCATACAAACGAACAAATACTGATGAAGACAACAAATGTAGCAGCTGCCTCTGCATCAATAGGTCTCAACATACACAAGGGGAAAAGCAACATTCTCAAATACAACATGGAGAACATCAAGCCAATCATATTTGATGGGG]

[+] EMBL CD149157             [TCAGTAAGGAGCGGAGCCAGACAAGGCTGTCTACTCTCCCTCTTCCTCTTTCTTCTAGTGATTGGCTGGATTATGAAAACCACAACATCTGAGGGGAAGCACGGAATACAATCGACATCTCAGAATCAATTAGATGATTTGGACTTCGCAGATCACTTATCCATCCTATACCATACAAACGAACAAATACTGATGAAGACAACAAATGTAGCAGCTGCCTCTGCATCAATAGGTCTCAACATACACAAGGGGAAAAGCAACATTCTCAAATACAACATGGAGAACATCAAGCCAATCATATTTGATGGGG]




>consensus_6313#2
TCAGTAAGGAGCGGAGCCAGACAAGGCTGTCTACTCTCCCTCTTCCTCTTTCTTCTAGTG
ATTGGCTGGATTATGAAAACCACAACATCTGAGGGGAAGCACGGAATACAATCGACATCT
CAGAATCAATTAGATGATTTGGACTTCGCAGATCACTTATCCATCCTATACCATACAAAC
GAACAAATACTGATGAAGACAACAAATGTAGCAGCTGCCTCTGCATCAATAGGTCTCAAC
ATACACAAGGGGAAAAGCAACATTCTCAAATACAACATGGAGAACATCAAGCCAATCATA
TTTGATGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6313#1      -TAAGACGTGACCAGCCAGAAGTTTAAACCCAACGAGTTTGTCGTTGGTAAATACTCTTC 59
consensus_6313#2      ------------------------------------------------------------
consensus_6313#0      TTTACAGGTTGGCAGCCCGGGTTCCGATGGAGTTCAAATTGTACGCACTATACCTTCTTT 60
                                                                                  

consensus_6313#1      TGATAGCTTGTTTCGTTTAGCTGTCG-ATTATAAATTCATCTTTCTGCTTAATCACTATC 118
consensus_6313#2      ----------------------------------------------------TCAGTAAG 8
consensus_6313#0      TGTCAGTTCTACTACTCAAATAATTTCATTTCCAACTGTTGCAACACAACAACCAGTCGC 120
                                                                           ** *   

consensus_6313#1      AACTAACT---ACTATCAGAAACTATCTACTA--GAATAATTTACTTTCTTGACCACT-- 171
consensus_6313#2      GAGCGGA----GCCAGACAAGGCTGTCTACTC--TCCCT-CTTCCTCTTTCTTCTAGT-- 59
consensus_6313#0      AGCCCAGTCAAGCAATCCTAGACAACAAATTCAGCAACAACAAAAGATATGTTACAATTA 180
                                  * *    *  *     * *                * *     * *  

consensus_6313#1      -GCCTGCCTAATTTCCAATTGCTG--AGTTCCATGGCGAATCAGAGGATACGAATGCTAG 228
consensus_6313#2      -GATTGGCTGGATTATGAAAACCACAACATCTGAGGGGAAGCACGGAATACAATCGACAT 118
consensus_6313#0      AAAATTATTAATTTTCAACAATTAC----CAGAAATTCAACCAAGAGTTATTAACGGCAA 236
                          *   *   **   *                    ** **     **  *  *  * 

consensus_6313#1      AAATTTACGGTGAGTTTGA-ACTATAAATTTCCTGCAATGTTATATCTTGTTTAAACTGT 287
consensus_6313#2      ---CTCAGAATCAATTAGATGATTTGGACTTCGCAGATCACT-TATCCATCCTATACCAT 174
consensus_6313#0      CC-ATAACAATAATAATACGAACGCAAATCTCAACCACAGTAATAACAATACCAAAATGA 295
                          * *   * *              *  **    *      ** *      * *    

consensus_6313#1      TTCGCCAGGCAAGGT---TACGTGTTTG----GCTCAAATTAA-ATTTGGACGCATACCA 339
consensus_6313#2      ACAAACGAACAAA-----TAC-TGATGA----AGACAA--CAA-ATGTAGCAGC-TGCCT 220
consensus_6313#0      TGAATCGAACTAGTTTTGTACGTGCTGATCTTAGACGACGTAATACACAACGTTCTACAA 355
                           *   * *      *** ** *         * *   ** *          * *  

consensus_6313#1      TTTC--AGTGTACAACGCTTCGTTAATTTATTAATTTCAGCAGCAGATTTCAATTACTTG 397
consensus_6313#2      CTGC--ATCA-ATAGGTCTCAACATACACAAGGGGAAAAGCAACATTCTCAAATACAACA 277
consensus_6313#0      GTGTTGATATGGCAAGGATTAATCGACCGCTGAGTATTGATAATAATATAATGGCTAATA 415
                       *    *      *    *      *               *  *   *           

consensus_6313#1      GGAGCAAGAGTAATCCAGGCGAGCTTCATAACTGTGTCAAATCCATTTGTA-TAATGTTT 456
consensus_6313#2      TGGAGAACATCAAGCCAATCATATTTGATGGGG--------------------------- 310
consensus_6313#0      ATCATAAAATTACTACTAATACTACTAATACTACTACTAACAGTGATTATAACAGTGGTA 475
                           ** *  *   *         * **                               

consensus_6313#1      ATGATGT--------------------------------- 463
consensus_6313#2      ----------------------------------------
consensus_6313#0      GTAGTACTAATAATGACCAAGTTACCAATACTAACTACAA 515