cluster # 6314

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Schistosoma mansoni
cluster # 6314 cluster # 6314 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6314#0 length = 687 sequences # 2

consensus_6314#1 length = 314 sequences # 2

consensusID : consensus_6314#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 687
fasta sequence

                              [CGAGGGGAATATTTCAGCAAATCCAAACGTTCAAAGAACAAGCGAATAACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAGCACTAGATAAGGTAGTTTATTAGATCTCCTATTATTGTTGTTAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCAGCTTCCGAATCTCAGTCTGTTGATAGCTCATCAACCTCCTCTACCTTGGATGTAAAAACAAAAGAAAATGTATTAACAGAAGACGAACTTGAGAAGATAAAGATAGATTTAGCCCGTTATGTCACCATGAAAGAGGGTACTGCTACTGATGACGCAACGACTGCAGTTGTTACCATTAGTAAACTTGCCCCAGATATTGTATGTACCAATGACTTTGACGAGGGGTTTCACGATCAAGTGATCGACCACACCCTTCGCTATCTGAAGTTCCTTTTGTCAAAATGGGGTCATG]

[+] EMBL CD084353             [CGAGGGGAATATTTCAGCAAATCCAAACGTTCAAAGAACAAGCGAATAACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAGCACTAGATAAGGTAGTTTATTAGATCTCCTATTATTGTTGTTAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCAGCTTCCGAATCTCAGTCTGTTGATAGCTCATCAACCTCCTCTACCTTGGATGTAAAAACAAAAGAAAATGTATTAACAGAAGACGAACTTGAGAAGATAAAGATAGATTTA                                                                                                                                                                                     ]
[-] EMBL CD189382             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAAAAGAAAATGTATTAACAGAAGACGAACTTGAGAAGATAAAGATAGATTTAGCCCGTTATGTCACCATGAAAGAGGGTACTGCTACTGATGACGCAACGACTGCAGTTGTTACCATTAGTAAACTTGCCCCAGATATTGTATGTACCAATGACTTTGACGAGGGGTTTCACGATCAAGTGATCGACCACACCCTTCGCTATCTGAAGTTCCTTTTGTCAAAATGGGGTCATG]




>consensus_6314#0
CGAGGGGAATATTTCAGCAAATCCAAACGTTCAAAGAACAAGCGAATAACAATGAAGATT
ATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAA
GTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAA
GGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGT
TGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAG
CACTAGATAAGGTAGTTTATTAGATCTCCTATTATTGTTGTTAGTTGGATGATGCTGAGG
ATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCAGCTTCCGAATCTCAGTCTGTTGATA
GCTCATCAACCTCCTCTACCTTGGATGTAAAAACAAAAGAAAATGTATTAACAGAAGACG
AACTTGAGAAGATAAAGATAGATTTAGCCCGTTATGTCACCATGAAAGAGGGTACTGCTA
CTGATGACGCAACGACTGCAGTTGTTACCATTAGTAAACTTGCCCCAGATATTGTATGTA
CCAATGACTTTGACGAGGGGTTTCACGATCAAGTGATCGACCACACCCTTCGCTATCTGA
AGTTCCTTTTGTCAAAATGGGGTCATG

consensusID : consensus_6314#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 314
fasta sequence

                              [ACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATTTAATTGCAGCACTAGATAAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCA]

[-] EMBL CD189944             [ACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATTTAATTGCAGCACTAGATAAGTTGGATGATGCTGAGGATGAAGAG                           ]
[+] EMBL CD184847             [                                            CTCTCGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCCTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAGCACTAGATAAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCA]




>consensus_6314#1
ACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGT
TCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTA
TTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACA
CTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATG
ATTTAATTGCAGCACTAGATAAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAG
GTCGTGGAAAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6314#0      CGAGGGGAATATTTCAGCAAATCCAAACGTTCAAAGAACAAGCGAATAACAATGAAGATT 60
consensus_6314#1      ------------------------------------------------ACAATGAAGATT 12
                                                                      ************

consensus_6314#0      ATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAA 120
consensus_6314#1      ATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAA 72
                      ************************************************************

consensus_6314#0      GTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAA 180
consensus_6314#1      GTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAA 132
                      ************************************************************

consensus_6314#0      GGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGT 240
consensus_6314#1      GGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGT 192
                      ************************************************************

consensus_6314#0      TGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAG 300
consensus_6314#1      TGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATTTAATTGCAG 252
                      ************************************************** *********

consensus_6314#0      CACTAGATAAGGTAGTTTATTAGATCTCCTATTATTGTTGTTAGTTGGATGATGCTGAGG 360
consensus_6314#1      CACTAGATAA---------------------------------GTTGGATGATGCTGAGG 279
                      **********                                 *****************

consensus_6314#0      ATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCAGCTTCCGAATCTCAGTCTGTTGATA 420
consensus_6314#1      ATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCA------------------------- 314
                      ***********************************                         

consensus_6314#0      GCTCATCAACCTCCTCTACCTTGGATGTAAAAACAAAAGAAAATGTATTAACAGAAGACG 480
consensus_6314#1      ------------------------------------------------------------
                                                                                  

consensus_6314#0      AACTTGAGAAGATAAAGATAGATTTAGCCCGTTATGTCACCATGAAAGAGGGTACTGCTA 540
consensus_6314#1      ------------------------------------------------------------
                                                                                  

consensus_6314#0      CTGATGACGCAACGACTGCAGTTGTTACCATTAGTAAACTTGCCCCAGATATTGTATGTA 600
consensus_6314#1      ------------------------------------------------------------
                                                                                  

consensus_6314#0      CCAATGACTTTGACGAGGGGTTTCACGATCAAGTGATCGACCACACCCTTCGCTATCTGA 660
consensus_6314#1      ------------------------------------------------------------
                                                                                  

consensus_6314#0      AGTTCCTTTTGTCAAAATGGGGTCATG 687
consensus_6314#1      ---------------------------