These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [TCGGCGGCCGATTCGGGTTTTGTGTCTCGAAATGGTCAGGGGATTGTCTGCAAAGGTGGTTGTTAGGGGGCTGCCTCCCAAATTAGGGGCCGATGATTTCATCAGGATTGTTGACCCGCTACCCTCTCACACTTACTTTAGGTTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGTTTGATGGCTACATTTTCTTGGATTGCGGGGTAATCCAAGTTTTTTAGTTACTCTTTCAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGNGAATCCATTNTAGATGATCTCCANAACAAGGAAGTGAATGCTCTTCAGGTGGGTGCAATAATGTAAT] [+] EMBL CD156766 [TCGGCGGCCGATTCGGGTTTTGTGTCTCGAAATGGTCAGGGGATTGTCTGCAAAGGTGGTTGTTAGGGGGCTGCCTCCCAAATTAGGGGCCGATGATTTCATCAGGATTGTTGACCCGCTACCCTCTCACACTTACTTTAGGTTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGTTTGATGGCTACATTTTCTTGGATTGCGGGGTAATCCAAGTTTTTTAGTTACTCTTTCAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGNGAATCCATTNTAGATGATCTCCANAACAAGGAAGTGAATGCTCTTCAGGTGGGTGCAATAATGTAAT] consensusID : consensus_6316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence [TCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGCTTGATGGCTACATTTTCTTGGATTGCGAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGTGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCGTCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAA] [+] EMBL CD190986 [TCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGCTTGATGGCTACATTTTCTTGGATTGCGAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGA ] [-] EMBL CD145430 [ AAATGAGTCCTCTGCACTTGTAGAGTNTGCTGTTTGCCAGGTATTGGCGTGTGCTANAGGGTCTTCAGATGATAAT GGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGTGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCGTCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAA] consensusID : consensus_6316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [NNACTTAGGTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAACTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGCGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCATCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAACCCTCACCATAACAGCACGGAAGATTTGACGGGGGTTGATC] [-] EMBL CD133736 [NNACTTAGGTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAACTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGCGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCATCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAACCCTCACCATAACAGCACGGAAGATTTGACGGGGGTTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6316#1 TCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGCTTGATGGCTACATTTTCTTGG 60 consensus_6316#2 ------------------------------------------------------------ consensus_6316#0 ---------------------TCGGCGGCCGATTCGGGTTTTGTGTCTCGAAATGGTCAG 39 consensus_6316#1 ATTGCGAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGT 120 consensus_6316#2 -------------------------------NNACTTAG--GTTTGC--GGTGCAGATGA 25 consensus_6316#0 GGGATTGTCTGCAAAGGTGGTTGTTAGGGGGCTGCCTCCCAAATTA---GGGGCCGATGA 96 * ** ** * * consensus_6316#1 GTGCTAAAGGG-----TCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACA-GG 174 consensus_6316#2 CT--CATTGGG-----TGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGG 78 consensus_6316#0 TT-TCATCAGGATTGTTGACCCGCTACCCTCTCACACTTACTTTAGGTTTTGCGGTGCAG 155 * * ** * * * * * consensus_6316#1 GTTCTTTATTGAAAGACTCAGCGT--ATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGT 232 consensus_6316#2 GTTCTTTATTGAAAGACTCAGCGT--ATGTGAAATTCTTAAACTCGCAATCTGCTGAAGT 136 consensus_6316#0 ATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGATT 215 * * **** * * ** * * * ** * *** ** * * consensus_6316#1 TTGTGCCGAAATATCAGAA-----TCAGAGTCTAAAA------AAACTCCCTGGGAATCC 281 consensus_6316#2 TTGTGCCGAAATATCAGAA-----TCAGAGTCTAAAA------AAACTCCCTGGGAATCC 185 consensus_6316#0 CTCTATTCGACTTCAAAGAAAGGTTTGATGGCTACATTTTCTTGGATTGCGGGGTAATCC 275 * * * * * * * * *** * * * * ** ***** consensus_6316#1 ATTTTAGATGATCTCCAAAACAAGGAAGTGAATGCTCTTCAGACACAAACCGTCACACCA 341 consensus_6316#2 ATTTTAGATGATCTCCAAAACAAGGAAGCGAATGCTCTTCAGACACAAACCGTCACACCA 245 consensus_6316#0 AAGTTTTTTAGTTACTCTTTCAGGGAAATGAGTCCTCTGCACTTGTAGAGTTT---GCTG 332 * ** * * * ** **** ** * **** ** * * * * consensus_6316#1 CTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACG-TAAAGATGAAGAATCGTC 400 consensus_6316#2 CTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACG-TAAAGATGAAGAATCATC 304 consensus_6316#0 TTTGCCAGGTATTGGCGTG--TGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGT 390 ** * ** * * * * * *** * *** * * ** consensus_6316#1 ACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGA 460 consensus_6316#2 ACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGA 364 consensus_6316#0 GGATAAAAAACAGGGTTCTTTAT-TGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGC 449 * * * *** * * * * * * * *** ** ** * * consensus_6316#1 CAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTG 520 consensus_6316#2 CAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTG 424 consensus_6316#0 --AATCTGC-TGAAGTT-TGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGN 505 ****** ***** * ** * * *** * **** ** ** consensus_6316#1 TGATCGTATTTGTGAAGTTTC--AAACAAAGAA---AA---------------------- 553 consensus_6316#2 TGATCGTATTTGTGAAGTTTC--AAACAAAGAA---AACCCTCACCATAACAGCACGGAA 479 consensus_6316#0 GAATCCATTNTAGATGATCTCCANAACAAGGAAGTGAATGCTCTTCAGGTGGGTGCAATA 565 *** * * * ** ***** *** ** consensus_6316#1 ------------------- consensus_6316#2 GATTTGACGGGGGTTGATC 498 consensus_6316#0 -ATGTAAT----------- 572 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||