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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 968 fasta sequence
[TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAACAGGAGGCAATCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAGTGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATTGGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGTTTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTTTCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTGCGTATCCTTTGGAATTTCTTTCATAA]
[+] EMBL CD188987 [TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCG ]
[-] EMBL CD169748 [ TCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAACAGGAGGCAATCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAGTGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATTGGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGTTTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTTTCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTGCGTATCCTTTGGAATTTCTTTCATAA]
consensusID : consensus_6337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence
[CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG]
[+] EMBL CD092242 [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG]
[+] EMBL CD092199 [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6337#0 -----------------TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGA 43
consensus_6337#1 CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGA 60
*******************************************
consensus_6337#0 TTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTA 103
consensus_6337#1 TTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTA 120
************************************************************
consensus_6337#0 AAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTA 163
consensus_6337#1 AAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTA 180
************************************************************
consensus_6337#0 GTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATA 223
consensus_6337#1 GTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATA 240
************************************************************
consensus_6337#0 TCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAG 283
consensus_6337#1 TCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAG 300
************************************************************
consensus_6337#0 ACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAA 343
consensus_6337#1 ACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAA 360
**************** *******************************************
consensus_6337#0 CCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGG 403
consensus_6337#1 CCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGG 420
************************************************************
consensus_6337#0 GTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAAT 463
consensus_6337#1 GTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAAT 480
************************************************************
consensus_6337#0 TGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCT 523
consensus_6337#1 TGATAAGTAG------------------------TTACACGACGTTTTGGTTTAACTTCT 516
********** **************************
consensus_6337#0 TCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTT 583
consensus_6337#1 TCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTT 576
************************************************************
consensus_6337#0 CCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAA-CAGGAGGCAA 642
consensus_6337#1 CCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG------ 630
****** ****************************************** ****
consensus_6337#0 TCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAG 702
consensus_6337#1 ------------------------------------------------------------
consensus_6337#0 TGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATT 762
consensus_6337#1 ------------------------------------------------------------
consensus_6337#0 GGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGT 822
consensus_6337#1 ------------------------------------------------------------
consensus_6337#0 TTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTT 882
consensus_6337#1 ------------------------------------------------------------
consensus_6337#0 TCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTG 942
consensus_6337#1 ------------------------------------------------------------
consensus_6337#0 CGTATCCTTTGGAATTTCTTTCATAA 968
consensus_6337#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||