cluster # 6340

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Schistosoma mansoni
cluster # 6340 cluster # 6340 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6340#0 length = 561 sequences # 3

consensus_6340#1 length = 346 sequences # 1

consensusID : consensus_6340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 561
fasta sequence

                              [TTTAATATTGGACATTGTTAAAGATTTCTGAGTTCTCTTTAAATTGAGTTTCGTTCTTGATTATGTTTTCCTTTCACTAAAAAAACAAAAAATATTAGATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATAAACGACATGCATGGGAGAAAGCAGTTAGAGAAGGTCAAACAGATGAACCACTATTCACGCCAGTTTGGTTTTCACCAAAACAAGATGTCCATGGTAATCTATATCATGAATATTTAGGAAACTATTGGGAATCAAAAGAAC]

[-] EMBL CD185460             [TTTAATATTGGACATTGTTAAAGATTTCTGAGTTCTCTTTAAATTGAGTTTCGTTCTTGATTATGTTTTCCTTTCACTAAAAAAACAAAAAATATTAGATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAG                                                                                                                                                                                       ]
[+] EMBL CD084394             [                                                                                                                            gGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATAAACGACATGCATGGGAGAAAGCAGTTAGAGAAGGTCAAACAGATGAACCACTATTCACGCCAGTTTGGTTTTCACCAAAACAAGATGTCCATGGTAATCTATATCATGAATATTTAGGAAACTATTGGGAATCAAAAGAAC]
[+] EMBL CD145968             [                                                                                                                                                                                                                                                               CTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATAAACG                                                                                                                                         ]




>consensus_6340#0
TTTAATATTGGACATTGTTAAAGATTTCTGAGTTCTCTTTAAATTGAGTTTCGTTCTTGA
TTATGTTTTCCTTTCACTAAAAAAACAAAAAATATTAGATTACAGGTTTTGTGAAAAATT
CAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAAC
GTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCAT
TACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAA
TGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAAC
AAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATA
AACGACATGCATGGGAGAAAGCAGTTAGAGAAGGTCAAACAGATGAACCACTATTCACGC
CAGTTTGGTTTTCACCAAAACAAGATGTCCATGGTAATCTATATCATGAATATTTAGGAA
ACTATTGGGAATCAAAAGAAC

consensusID : consensus_6340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [TTATTTTAATAGAGGACAGTCAAGAAGAATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGA]

[+] EMBL CD114650             [TTATTTTAATAGAGGACAGTCAAGAAGAATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGA]




>consensus_6340#1
TTATTTTAATAGAGGACAGTCAAGAAGAATTACAGGTTTTGTGAAAAATTCAACTGGTTT
ACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAAT
CGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAA
TGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGG
TGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTG
GGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6340#0      TTTAATATTGGACATTGTTAAAGATTTCTGAGTTCTCTTTAAATTGAGTTTCGTTCTTGA 60
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      TTATGTTTTCCTTTCACTAAAAAAACAAAAAATATTAGATTACAGGTTTTGTGAAAAATT 120
consensus_6340#1      --------TTATTTTAATAGAGGACAGTCAAGAA--GAATTACAGGTTTTGTGAAAAATT 50
                              *  *** * ** *  *     **  *    **********************

consensus_6340#0      CAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAAC 180
consensus_6340#1      CAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAAC 110
                      ************************************************************

consensus_6340#0      GTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCAT 240
consensus_6340#1      GTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCAT 170
                      ************************************************************

consensus_6340#0      TACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAA 300
consensus_6340#1      TACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAA 230
                      ************************************************************

consensus_6340#0      TGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAAC 360
consensus_6340#1      TGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAAC 290
                      ************************************************************

consensus_6340#0      AAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATA 420
consensus_6340#1      AAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGA---- 346
                      ********************************************************    

consensus_6340#0      AACGACATGCATGGGAGAAAGCAGTTAGAGAAGGTCAAACAGATGAACCACTATTCACGC 480
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      CAGTTTGGTTTTCACCAAAACAAGATGTCCATGGTAATCTATATCATGAATATTTAGGAA 540
consensus_6340#1      ------------------------------------------------------------
                                                                                  

consensus_6340#0      ACTATTGGGAATCAAAAGAAC 561
consensus_6340#1      ---------------------