cluster # 6342

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Schistosoma mansoni
cluster # 6342 cluster # 6342 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6342#0 length = 602 sequences # 3

consensus_6342#1 length = 439 sequences # 1

consensusID : consensus_6342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 602
fasta sequence

                              [TCAATCCTCTCCCATTGTTAGTAAGAGATTTGT-GGATTCTATACTATTAAGGAAATTGCTCCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGAGGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGCAATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCTTTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCGAATGGGAAAATATTATTCTATTACGAAGGCATTTCTAAGGGAATCAAGGAAATGCAACGGCAATTAACCTTCCGTGGTGAGATTCC-GTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAATGATAACGATATTCGTGATTTAAA]

[+] EMBL CD164498             [TCAATCCTCTCCCATTGTTAGTAAGAGATTTGT GGATTCTATACTATTAAGGAAATTGCTCCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGAGGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGCAATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCTTTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCGAATGGGAAAATATTATTCTATTACGAAGGCATTTCTAAGGGAATCAAGGAAATGCAACGGCAATTAACCTTCCGTGGTGAGATTCC GTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCANGACGCAAAGTCGTCGAATGAAATGTGTATT                                                           ]
[+] EMBL CD156944             [              TTGTTAGTAAGAGATTTGTGGGATTCTATACTATTAAGGAAATTGCTCCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGAGGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGCAATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCTTTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCGAATGGGAAAATATTATTCTATTATGAGGGCATTTCTAAGGGAATCAAGGAAATGCAACGGCAATTAACCTTCCGTGGTGAGATTCC GTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCANAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAATGATAACGATATTCGTGATTTAAA]
[+] EMBL CD164357             [                                                                                                                                                                                                                                                                                                                                                                                    CCGTGGTGAGATTCCTGTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATT                                                           ]




>consensus_6342#0
TCAATCCTCTCCCATTGTTAGTAAGAGATTTGTGGATTCTATACTATTAAGGAAATTGCT
CCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGA
GGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGC
AATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCT
TTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCG
AATGGGAAAATATTATTCTATTACGAAGGCATTTCTAAGGGAATCAAGGAAATGCAACGG
CAATTAACCTTCCGTGGTGAGATTCCGTGTGGAAACCAGAATAACAGAAGGATCAGTGTA
TTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGAT
TGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGT
ATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAATGATAACGATATTCGTGATTTA
AA

consensusID : consensus_6342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 439
fasta sequence

                              [GGGATGTTGTTTAAACTCTTTTTTATCCGTAATCAGCAATTAAACACTTCCTTATTTTGAATGCTCCTTAATCGAGCTAACACCTTGTTTTGCACAAAATATAAATCGAAATCTCAAGTGTCTACTTTGTACATCTCATCACATTAGATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAACGATAACGATATTCGTGATTTCAAATTAAATGGTTGTCGGGTTAAAAATAACTTGAATGTAGACGCTCCGAGTGAATCAACACTTAACAAACAAGAAAAAACAAATGAAGAACT]

[-] EMBL CD121251             [GGGATGTTGTTTAAACTCTTTTTTATCCGTAATCAGCAATTAAACACTTCCTTATTTTGAATGCTCCTTAATCGAGCTAACACCTTGTTTTGCACAAAATATAAATCGAAATCTCAAGTGTCTACTTTGTACATCTCATCACATTAGATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAACGATAACGATATTCGTGATTTCAAATTAAATGGTTGTCGGGTTAAAAATAACTTGAATGTAGACGCTCCGAGTGAATCAACACTTAACAAACAAGAAAAAACAAATGAAGAACT]




>consensus_6342#1
GGGATGTTGTTTAAACTCTTTTTTATCCGTAATCAGCAATTAAACACTTCCTTATTTTGA
ATGCTCCTTAATCGAGCTAACACCTTGTTTTGCACAAAATATAAATCGAAATCTCAAGTG
TCTACTTTGTACATCTCATCACATTAGATAACAGAAGGATCAGTGTATTTGTTCCTGGAA
GATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCA
ACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATTTGGTGTGAAA
GTGCCCATATGTGCGTTACCAGCAACGATAACGATATTCGTGATTTCAAATTAAATGGTT
GTCGGGTTAAAAATAACTTGAATGTAGACGCTCCGAGTGAATCAACACTTAACAAACAAG
AAAAAACAAATGAAGAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6342#0      TCAATCCTCTCCCATTGTTAGTAAGAGATTTGTGGATTCTATACTATTAAGGAAATTGCT 60
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      CCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGA 120
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      GGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGC 180
consensus_6342#1      ------------------------------------------------------------
                                                                                  

consensus_6342#0      AATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCT 240
consensus_6342#1      -----------------------------------GGGAT-----GTTGTTTAAACTCTT 20
                                                          * **     * ***  **     *

consensus_6342#0      TTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCG 300
consensus_6342#1      TTTTATCCGTAATCAGCAATTAAACACTTC---CTTATTTTGAATGCTCCT---TAATCG 74
                      *** ** * * *     ** ** **   *     * *** * * * *** *    * ***

consensus_6342#0      AATGGGAAAATATTATTCTATTACGAAGGCATTTCTAAGGGAATCAAGGAAATGCAACGG 360
consensus_6342#1      AGC--TAACACCTTGTTTTGC-ACAAA---------ATATAAATCGA--------AATCT 114
                      *     ** *  ** ** *   ** **         *    **** *        **   

consensus_6342#0      CAATTAACCTTCCGTGGTGAGATTCCGTGTGGAAACCAGAATAACAGAAGGATCAGTGTA 420
consensus_6342#1      CAAGTG-TCTACTTTG--TACATCTCATC---ACATTAGA-TAACAGAAGGATCAGTGTA 167
                      *** *   ** *  **   * **  * *    * *  *** *******************

consensus_6342#0      TTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGAT 480
consensus_6342#1      TTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGAT 227
                      ************************************************************

consensus_6342#0      TGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGT 540
consensus_6342#1      TGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGT 287
                      ************************************************************

consensus_6342#0      ATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAATGATAACGATATTCGTGATTTA 600
consensus_6342#1      ATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAACGATAACGATATTCGTGATTTC 347
                      ************************************** ******************** 

consensus_6342#0      AA---------------------------------------------------------- 602
consensus_6342#1      AAATTAAATGGTTGTCGGGTTAAAAATAACTTGAATGTAGACGCTCCGAGTGAATCAACA 407
                      **                                                          

consensus_6342#0      --------------------------------
consensus_6342#1      CTTAACAAACAAGAAAAAACAAATGAAGAACT 439