These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 500 fasta sequence [TTCTCAAGGCCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAGTTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTTAAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGAGATTGTATATAACAGAGGTGTT] [+] EMBL AI976303 [TTCTCAAGGCCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAGTTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTTAAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGAGATTGTATATAACAGAGG ] [+] EMBL AI976377 [ CCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAGTTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTTAAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGAGATTGTATATAACAGAGCTGTT] [+] EMBL CD149444 [ CCACTGATAACTCCGGAGGATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGGTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAACACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCTGAAACTAGCAGAGATTGTATATAACAGAGG ] consensusID : consensus_6348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [GAGAATCGTCGACATTAGAGATCGTTTTGGTCTTACGATTAACGTAATATGACGGTTCAGATTTTGAAATACCGTGCTGTTCTTTAGCCCAAACTTGTATTAACCCTTGACCTCCAACGCGTAGAATACGAGCCAACTCATTTACTGCTTCTATACGCCTAGCCATAGTGGATAAATGATGGATAACAGCTATGCACAGAAAAAAATCAAAACGTTCTGAACAATAAGGTATTCGTAGTATGTCACCTATGACTACATCGAAGCCTCTGTTATATACAATCTCTGCTATTTTCGGGCTTC] [+] EMBL CD149511 [GAGAATCGTCGACATTAGAGATCGTTTTGGTCTTACGATTAACGTAATATGACGGTTCAGATTTTGAAATACCGTGCTGTTCTTTAGCCCAAACTTGTATTAACCCTTGACCTCCAACGCGTAGAATACGAGCCAACTCATTTACTGCTTCTATACGCCTAGCCATAGTGGATAAATGATGGATAACAGCTATGCACAGAAAAAAATCAAAACGTTCTGAACAATAAGGTATTCGTAGTATGTCACCTATGACTACATCGAAGCCTCTGTTATATACAATCTCTGCTATTTTCGGGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6348#0 TTCTCAAGGCCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAG 60 consensus_6348#1 ------------------------------------------------------------ consensus_6348#0 TTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTT 120 consensus_6348#1 ------------------------------------------------------------ consensus_6348#0 AAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTT-C 179 consensus_6348#1 ----GAGAATCGTCGACATTAGAGA---TCGTTTTGGTCTTACGATTAACGTAATATGAC 53 ** * * ** ** * * * * * ******* * * consensus_6348#0 GATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAG 239 consensus_6348#1 GGTTCAGAT--TTTGAAATACCGTGCTGTTCTTTAGCCCAAACTTGTATTAACCCTTGAC 111 * * * *** ** * ** ***** * * * *** ** ** *** consensus_6348#0 TTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCA 299 consensus_6348#1 CTC----CAACGCGTAGAATAC--GAGCCAACTCATTTACTGCTTCTATACGCCTAGCCA 165 ** * ** ** ** *** * * **** ** * * ** * *** consensus_6348#0 CTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCA 359 consensus_6348#1 TAGTGGATAAATGATG--GATAACAGCTATGCACAGAAAAAAATCAAAACGTTCTGAACA 223 * * ** ** *** * * ** * * **** ** * * ** consensus_6348#0 AAATATTATGC-TACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTAT 418 consensus_6348#1 ATAAGGTATTCGTAGTATGTCACCTATGACTACATCGAAGCCTCTGTTATATACAATCTC 283 * * *** * ** **** * *** *** **** * * * * * ** consensus_6348#0 AGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGA 478 consensus_6348#1 TGCTATT--TTCGGGCTTC----------------------------------------- 300 * * *** *** consensus_6348#0 GATTGTATATAACAGAGGTGTT 500 consensus_6348#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||