cluster # 6356

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Schistosoma mansoni
cluster # 6356 cluster # 6356 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6356#0 length = 605 sequences # 3

consensus_6356#1 length = 387 sequences # 1

consensusID : consensus_6356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 605
fasta sequence

                              [GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCAATGTCTTGGACGACCTCACACCGTCCCTCTCTTTGACCACAATAGCGCCTGGAAATTCTTCAAATCGTTTGTTGCCGTTCACAGATGATCTTGGTTTATGCATTANACACTCTCCTGATGTGTC]

[+] EMBL CD064539             [GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCAATGTCTTGGACGACCTCACACCGTCCCTCTCTTTGACCACAATAGCGCCTGGAAATTCTTCAAATCGTTTGTTGCCGTTCACAGATGATCTTGGTTTATGCATTANACACTCTCCTGATGTGTC]
[+] EMBL CD064544             [GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGCTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTCTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTGCGTGACTGAAA                                                                                                                                                                                                                                              ]
[+] EMBL CD112543             [   CCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATAGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACATGC                                                                                                                                 ]




>consensus_6356#0
GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAA
CATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTC
ACTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGT
AGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACAC
GTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGCTTTT
CTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTCCGTC
ACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCG
GGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACATGCTTCC
AATGTCTTGGACGACCTCACACCGTCCCTCTCTTTGACCACAATAGCGCCTGGAAATTCT
TCAAATCGTTTGTTGCCGTTCACAGATGATCTTGGTTTATGCATTANACACTCTCCTGAT
GTGTC

consensusID : consensus_6356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [GCTCGCAGTTTGATCCCTGCTTTTCTCATTAGCTCATGTTTACGGATTTTGTATATTATGTACTAGGATTGTTTTGTGCACCCTAAGTGCAGTACTATTAACAAATATTTTGACTGCTGTGAACGGAAATTATTCTTTACCCCCCGTAGTTTCTTCGCTCTTTACTGTGGTTCATGTGAGAATGAGTTGTTTAGCATGTTTTAGTGTGTCCGAGGACTAATGGTAAATGGAGACGGTTTTTTCGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCNACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCNA]

[+] EMBL CD184789             [GCTCGCAGTTTGATCCCTGCTTTTCTCATTAGCTCATGTTTACGGATTTTGTATATTATGTACTAGGATTGTTTTGTGCACCCTAAGTGCAGTACTATTAACAAATATTTTGACTGCTGTGAACGGAAATTATTCTTTACCCCCCGTAGTTTCTTCGCTCTTTACTGTGGTTCATGTGAGAATGAGTTGTTTAGCATGTTTTAGTGTGTCCGAGGACTAATGGTAAATGGAGACGGTTTTTTCGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCNACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCNA]




>consensus_6356#1
GCTCGCAGTTTGATCCCTGCTTTTCTCATTAGCTCATGTTTACGGATTTTGTATATTATG
TACTAGGATTGTTTTGTGCACCCTAAGTGCAGTACTATTAACAAATATTTTGACTGCTGT
GAACGGAAATTATTCTTTACCCCCCGTAGTTTCTTCGCTCTTTACTGTGGTTCATGTGAG
AATGAGTTGTTTAGCATGTTTTAGTGTGTCCGAGGACTAATGGTAAATGGAGACGGTTTT
TTCGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGA
TGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCNACATCTTTGGG
GATTACCTGTCCGGAACATGCTTCCNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6356#0      GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAA 60
consensus_6356#1      ------------------------------------------------------------
                                                                                  

consensus_6356#0      CATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTC 120
consensus_6356#1      ---------------------------------GCTCGCAGTTTGATCCCTGCTTTTCTC 27
                                                           *  *** **  *    **** **

consensus_6356#0      A----CTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTT 176
consensus_6356#1      ATTAGCTCATGTTTACGGATTTTGTATATTATGTACTAGGAT-TGTTTT--GTGCACCCT 84
                      *    ****  ****  *** *  * **      *  *  ** ** * *  **  *   *

consensus_6356#0      TAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAAT 236
consensus_6356#1      AAGTGCAGTACTATTAACAAATATTTTGACTGCTGTGAACGGAAATT---ATTCTTTACC 141
                       ***  *   * * * *    *  *     ** ***  *   * **    *  **  *  

consensus_6356#0      ACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGC 296
consensus_6356#1      CCCCGTAGTTTCTTCGCTCTT--TACTGTGGTTCATGTGAGAATGAGTTGTTTAGCATGT 199
                       * ****  ** *  * * **  * * **   *    * *   * ***  ***     * 

consensus_6356#0      TTTTCTCTACTCAAAGTTCTAC--CCAACTTAAAATTTTTCACAGGTGCCCACCTCTATT 354
consensus_6356#1      TTTAGTGTGTCCGAGGACTAATGGTAAATGGAGACGGTTTTTTCGGTGCCCACCTCTATT 259
                      ***  * *   * * *    *     **   * *   ***    ****************

consensus_6356#0      TCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATT 414
consensus_6356#1      TCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATT 319
                      ************************************************************

consensus_6356#0      CAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACAT 474
consensus_6356#1      CAGCCGGGTTCTTCAAAATATTCACACCCNACATCTTTGGGGATTACCTGTCCGGAACAT 379
                      ***************************** ******************************

consensus_6356#0      GCTTCCAATGTCTTGGACGACCTCACACCGTCCCTCTCTTTGACCACAATAGCGCCTGGA 534
consensus_6356#1      GCTTCCNA---------------------------------------------------- 387
                      ****** *                                                    

consensus_6356#0      AATTCTTCAAATCGTTTGTTGCCGTTCACAGATGATCTTGGTTTATGCATTANACACTCT 594
consensus_6356#1      ------------------------------------------------------------
                                                                                  

consensus_6356#0      CCTGATGTGTC 605
consensus_6356#1      -----------