cluster # 6359

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Schistosoma mansoni
cluster # 6359 cluster # 6359 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6359#0 length = 863 sequences # 3

consensus_6359#1 length = 505 sequences # 1

consensusID : consensus_6359#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 863
fasta sequence

                              [TAGTGATTTTTTGAAAGTAACAGGAAAATTGGTTGGTTGGATTTGTCTGGAAGAGATATTTAGTGAAAAGATGTGATGCCTTTAAACTTGTAAATTCTTTTAAAACGTGCTTAAGTGGAGAGTTATATAAAATGTACCTACCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCATTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTACCGCCAGCCTCAACGCGAGCATGTATCTTTTCCAAAAATTCCCGTTCTCTTGTACGTTTTGAATCTCGTATTGTCGTTGCGTAAGTGCTTTCCGTAATGAGAAGATCTGGACGACAACGAGAAACCCAAGCTGCACCAAGATGTCTATCGGGTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTGACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAAGTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGTATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACTTCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA]

[+] EMBL CD127489             [TAGTGATTTTTTGAAAGTAACAGGAAAATTGGTTGGTTGGATTTGTCTGGAAGAGATATTTAGTGAAAAGATGTGATGCCTTTAAACTTGTAAATTCTTTTAAAACGTGCTTAAGTGGAGAGTTATATAAAATGTACCTACCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCATTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTACCGCCAGCCTCAACGCGAGCATGTATCTTTTCCAAAAATTCCCGTTCTCTTGTACGTTTTGAATCTCGTATTGTCGTTGCGTAAGTGCTTTCCGTAATGAGAAGATCTGGACGACAACGAGAAACCCAAGCTGCACCAAGATGTCTATCGGGTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTTGTTCCTACGCGTACAAGATACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTT                                                                                                                                                                                                                                                         ]
[+] EMBL CD124997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTGACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAAGTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGTATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACTTCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA]
[+] EMBL CD124989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTGTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATTGCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTGACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAAGTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGTATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACTTCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA]




>consensus_6359#0
TAGTGATTTTTTGAAAGTAACAGGAAAATTGGTTGGTTGGATTTGTCTGGAAGAGATATT
TAGTGAAAAGATGTGATGCCTTTAAACTTGTAAATTCTTTTAAAACGTGCTTAAGTGGAG
AGTTATATAAAATGTACCTACCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAA
TGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCATTAGCTTT
TTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGT
TTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTT
ACCGCCAGCCTCAACGCGAGCATGTATCTTTTCCAAAAATTCCCGTTCTCTTGTACGTTT
TGAATCTCGTATTGTCGTTGCGTAAGTGCTTTCCGTAATGAGAAGATCTGGACGACAACG
AGAAACCCAAGCTGCACCAAGATGTCTATCGGGTGTCATGTTGTAATCGCCGGTATACAA
GACAGAATTCGTTCCTACGCGTACAAGAAACATTGCTGCTCCCAGAACGTGGCCAGCATA
AAATGCCTGTATTTCGAGCTCATCATCTACTTTGACTGTTTGATGTATGTACGCACACCT
AACTTTCGTCATACACCGATATATCATATCAGAAGTGAAAAAGTTTTGATCTCCTCTCCT
CTCAACATTGATTTTACGATAATCTTCCAAAAGTATCGAGCAAATTGCCTTGGTAGGATG
AGTCATATAGATTGGACCATCGTAGCCTATTACTTCGGTCATATAAGGAAGAGCTCCACA
GTGGTCGAGATGGAAATGACTAA

consensusID : consensus_6359#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [TATCAACTGCATAATACCACGAGCATCTGCATGAGCTGAGAACGATAAGTATTCAACTGCCATTTTCACTTCTAAAACTTGTTTATCAAATTCAAGACGCCTGACTCCATTTAAAATCTTGTAACCTACAGTCCCAGCAACACAATATCCTGGAATTACAACCATATTTCTTTCATCTGAAGCCCATTTACGAAATATATACAAAGATTGTCCAGCGTGAAGCATACCTGGTGTGGCGAAGACTACCATTGGTCCTGGATTATCGACTGTCCCTTGCCCAAGAGGCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCACTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTA]

[+] EMBL CD161023             [TATCAACTGCATAATACCACGAGCATCTGCATGAGCTGAGAACGATAAGTATTCAACTGCCATTTTCACTTCTAAAACTTGTTTATCAAATTCAAGACGCCTGACTCCATTTAAAATCTTGTAACCTACAGTCCCAGCAACACAATATCCTGGAATTACAACCATATTTCTTTCATCTGAAGCCCATTTACGAAATATATACAAAGATTGTCCAGCGTGAAGCATACCTGGTGTGGCGAAGACTACCATTGGTCCTGGATTATCGACTGTCCCTTGCCCAAGAGGCTTTATATGTTTGAAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAACAACTTGTAATACTCACTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAAGGCAAAGACAGGGATCAAGACTTTA]




>consensus_6359#1
TATCAACTGCATAATACCACGAGCATCTGCATGAGCTGAGAACGATAAGTATTCAACTGC
CATTTTCACTTCTAAAACTTGTTTATCAAATTCAAGACGCCTGACTCCATTTAAAATCTT
GTAACCTACAGTCCCAGCAACACAATATCCTGGAATTACAACCATATTTCTTTCATCTGA
AGCCCATTTACGAAATATATACAAAGATTGTCCAGCGTGAAGCATACCTGGTGTGGCGAA
GACTACCATTGGTCCTGGATTATCGACTGTCCCTTGCCCAAGAGGCTTTATATGTTTGAA
GTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATAAA
CAACTTGTAATACTCACTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACGGA
AATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCTAA
GGCAAAGACAGGGATCAAGACTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6359#0      ------------------------------------------------------------
consensus_6359#1      TATCAACTGCATAATACCACGAGCATCTGCATGAGCTGAGAACGATAAGTATTCAACTGC 60
                                                                                  

consensus_6359#0      ------------------------------------------------------------
consensus_6359#1      CATTTTCACTTCTAAAACTTGTTTATCAAATTCAAGACGCCTGACTCCATTTAAAATCTT 120
                                                                                  

consensus_6359#0      -------------------TAGTGATTTTTTGAAAGTAACAGGAAAATTGGTTGGTTGGA 41
consensus_6359#1      GTAACCTACAGTCCCAGCAACACAATATCCTGGAATTACAACCATATTTCTTTCATCTGA 180
                                              ** *  ** ** **  *  * * **  **  *  **

consensus_6359#0      TTTGTCTGGAAGAGATATTTAGTGAAAAGATGTGATGCCTTTAAACTTGTAAATTCTTTT 101
consensus_6359#1      AGCCCATTTACGAAATATATA--CAAAGATTGTCCAGCGTGAAGCATACCTGGTGTGGCG 238
                            *  * ** **** **   ***   ***   ** *  *   *      *      

consensus_6359#0      AAAACGTGCTTAAGTGGAGAGTTATATAAAATG---TACCTAC----CTTTATATGTTTG 154
consensus_6359#1      AAGACTACCATTGGTCCTGGATTATCGACTGTCCCTTGCCCAAGAGGCTTTATATGTTTG 298
                      ** **   * *  **   *  ****  *   *    * ** *     *************

consensus_6359#0      AAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATA 214
consensus_6359#1      AAGTCAAACATATTTCGTTTTACAAATGTCTCCTTGATTTTTTGATTAGTCCACGAGATA 358
                      ************************************************************

consensus_6359#0      AACAACTTGTAATACTCATTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACG 274
consensus_6359#1      AACAACTTGTAATACTCACTAGCTTTTTCAGCCATTCCCATGGAGAAGTAAATTGGGACG 418
                      ****************** *****************************************

consensus_6359#0      GAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCT 334
consensus_6359#1      GAAATATTCATTCTTTCCCAATATGTTTCAAGCAATATACAAAGTTCTTGAGCTCGACCT 478
                      ************************************************************

consensus_6359#0      AAGGCAAAGACAGGGATCAAGACTTTACCGCCAGCCTCAACGCGAGCATGTATCTTTTCC 394
consensus_6359#1      AAGGCAAAGACAGGGATCAAGACTTTA--------------------------------- 505
                      ***************************                                 

consensus_6359#0      AAAAATTCCCGTTCTCTTGTACGTTTTGAATCTCGTATTGTCGTTGCGTAAGTGCTTTCC 454
consensus_6359#1      ------------------------------------------------------------
                                                                                  

consensus_6359#0      GTAATGAGAAGATCTGGACGACAACGAGAAACCCAAGCTGCACCAAGATGTCTATCGGGT 514
consensus_6359#1      ------------------------------------------------------------
                                                                                  

consensus_6359#0      GTCATGTTGTAATCGCCGGTATACAAGACAGAATTCGTTCCTACGCGTACAAGAAACATT 574
consensus_6359#1      ------------------------------------------------------------
                                                                                  

consensus_6359#0      GCTGCTCCCAGAACGTGGCCAGCATAAAATGCCTGTATTTCGAGCTCATCATCTACTTTG 634
consensus_6359#1      ------------------------------------------------------------
                                                                                  

consensus_6359#0      ACTGTTTGATGTATGTACGCACACCTAACTTTCGTCATACACCGATATATCATATCAGAA 694
consensus_6359#1      ------------------------------------------------------------
                                                                                  

consensus_6359#0      GTGAAAAAGTTTTGATCTCCTCTCCTCTCAACATTGATTTTACGATAATCTTCCAAAAGT 754
consensus_6359#1      ------------------------------------------------------------
                                                                                  

consensus_6359#0      ATCGAGCAAATTGCCTTGGTAGGATGAGTCATATAGATTGGACCATCGTAGCCTATTACT 814
consensus_6359#1      ------------------------------------------------------------
                                                                                  

consensus_6359#0      TCGGTCATATAAGGAAGAGCTCCACAGTGGTCGAGATGGAAATGACTAA 863
consensus_6359#1      -------------------------------------------------