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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence
[AAATGATTCTGAACCAAGTGAATGTGATAATTCCATAGGTTGATGAATATCTCTGTTAGTATGTTGTTGTATTTTAGTGATTGTTGGATCTAAATTGGCGTAAGCTGACTGAGCCACTATAATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGATACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTGGGCATAGATTAGCTTTTTTTTGTCCGATCTCGACTGGCTTAGTAATTTCATCATTTGTATTCGTGGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACCACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGTGGAAATTTGTGAAATGGCAGCATCAGACCAGTTGGATACTATCAGACTATTCTTGCCAATACTATGAGTGTTTGCATTGTTTAAGGATAGATCACTACTAACACGAGTGCTTGACTTCCCTAGTCTTTCGCCACTTACGGCCATGTCAATAAACTTTAACCGATTAATTTCAGTACATTTAAAAGGTCANGGGGAAGTTGCAATTGTNATTAAAGTAAAGT]
[+] EMBL CD201093 [AAATGATTCTGAACCAAGTGAATGTGATAATTCCATAGGTTGATGAATATCTCTGTTAGTATGTTGTTGTATTTTAGTGATTGTTGGATCTAAATTGGCGTAAGCTGACTGAGCCACTATAATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGATACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTGGGCATAGATTAGCTTTTTTTTGTCCGATCTCGACTGGCTTAGTAATTTCATCATTTGTATTCGTGGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACCACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGTGGAAATTTGTGAAATGGCAGCATCAGACCAGTTGGATACTATCAGACTATTCTTGCCAATACTATGAGTGTTTGCATTGTTTAAGGATAGATCACTACTAACACGAGTGCTTGACTTCCCTAGTCTTTCGCCACTTACGGCCATGTCAATAAACTTTAACCGATTAATTTCAGTACATTTAAAAGGTCANGGGGAAGTTGCAATTGTNATTAAAGTAAAGT]
[+] EMBL CD185160 [ TGGATCTAAATTGGCGTAAGCTGACTGAGCCACTATAATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGATACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTGGGCATAGATTAGCTTTTTTTTGTCCGATCTCGACTGGCTTAGTAATTTCATCATTTGTATTCGTGGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACCACAtgaa ]
[+] EMBL CD144690 [ AATTGACCATAAATAGCACCACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGTGGAAATTTGTGAAATGGCAG ]
consensusID : consensus_6363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence
[CTATGGAATTATCACATTCACTTGGTTCAGAATCATTTATATTTTCATGCCATCCCGATGTTCAACCAACTGCAATGGATATAGGTGGACAACCAGGTAGTCCATCATTATCAAAAAATCTTACAACTGTAGTATCTAGTTGCTTACTTCAAAGTAGTACTTCACAGAGCGGATTAAATACTTATTGTTATCCTATTTTTCCATTTTCTGTTTCCACTGCGGATGAAATTACTTGTAATTCAACATTATGTAATCATGTCAAAGATGTTGGATTAGGCAATAATACTCGCGGTACTATAGTTACTCATTGTGAACCGGTTGTAAATGTTAGTAATCAGTATCCTTGTCCTCGAGATTTAGAACAACGACCTGTCATAAAAATGTCAGTAGATCTTATTCGAACGTATAAAAATATTAATGAGGTATACTACCGAAAGAAACGTCGTATTAGGGAACAAATTAGCGAGGATAGTATTCAAAAAAGAGATCGTAAAGGTTCTGTTACTTTTGGTAATGGTGG]
[+] EMBL CD178615 [CTATGGAATTATCACATTCACTTGGTTCAGAATCATTTATATTTTCATGCCATCCCGATGTTCAACCAACTGCAATGGATATAGGTGGACAACCAGGTAGTCCATCATTATCAAAAAATCTTACAACTGTAGTATCTAGTTGCTTACTTCAAAGTAGTACTTCACAGAGCGGATTAAATACTTATTGTTATCCTATTTTTCCATTTTCTGTTTCCACTGCGGATGAAATTACTTGTAATTCAACATTATGTAATCATGTCAAAGATGTTGGATTAGGCAATAATACTCGCGGTACTATAGTTACTCATTGTGAACCGGTTGTAAATGTTAGTAATCAGTATCCTTGTCCTCGAGATTTAGAACAACGACCTGTCATAAAAATGTCAGTAGATCTTATTCGAACGTATAAAAATATTAATGAGGTATACTACCGAAAGAAACGTCGTATTAGGGAACAAATTAGCGAGGATAGTATTCAAAAAAGAGATCGTAAAGGTTCTGTTACTTTTGGTAATGGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6363#0 AAATGATTCTGAACCAAGTGAATGTGATAATTCCATAGGTTGATGAATATCTCTGTTAGT 60
consensus_6363#1 -------------CTATGGAATTATCACA-TTCACTTGGTTCAGAATCATTTATATTTTC 46
* * * * * * * * *** * **** * * ** * * **
consensus_6363#0 ATGTTGTTGTATTTTAGTGATTGTTGGATCTAAATTGGCGTAAGCTGACTGAGCCACTAT 120
consensus_6363#1 ATGCC-----ATCCCGATGTTCAACCAACTGCAATGGATATAGGTGGAC--AACCAG-GT 98
*** ** ** * * *** * ** * *** * *** *
consensus_6363#0 AATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGA 180
consensus_6363#1 AGTCCATCA------TTATCAAAAAATCTTACA-------ACTGTAGTATCTA--GTTGC 143
* ** * ** **** * * *** ** ****** * ****
consensus_6363#0 TACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTG--GGCATAGA 238
consensus_6363#1 T----TACTTCAAAGTAGTACTTCACAGAGCG--GATTAAATACTTATTGTTATCCTATT 197
* * ** ** * **** * * * **** *** ** *** * **
consensus_6363#0 TTAGCTTTTTTTTGTCCGATCTCGACTGGC----TTAGTAATTTCATCATTTGTATTCGT 294
consensus_6363#1 TTTCCATTTTCTGTTTCCACTGCGGATGAAATTACTTGTAATTCAACATTATGTAATCAT 257
** * **** * * * * ** ** * ****** * * **** ** *
consensus_6363#0 GGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACC 354
consensus_6363#1 G-TCAAAGATGTTGGATTAGGCAATAATACTCGCGGTACTA--TAGTTACTCATTGTGA- 313
* * ** * * *** ** * *** * * * ** *
consensus_6363#0 ACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGT 414
consensus_6363#1 ACCGGTTGTAAATGTTAGTAATCAGTATCCTTGTCCTCGAGATTTAGAACAACGACCTGT 373
** * * *** ** ** * ** * ** * ** * *** * **
consensus_6363#0 GGAAATTTGTGAAATGGCAGCATCAGACCAGTTGGATACTATCAGACTATTCTTGCCA-A 473
consensus_6363#1 CATAA------AAATGTCAGTA--GATCTTATTCGAACGTATAAAAATATTAATGAGGTA 425
** ***** *** * * ** ** *** * * **** ** *
consensus_6363#0 TACTATGAGTGTTTGCATTGTTTAAGGATAGATCACTACTAACACGAGTGCTT------G 527
consensus_6363#1 TACTACCGAAAGAAACGTCGTATTAGGGAACAA-ATTAGCGAGGATAGTATTCAAAAAAG 484
***** * * ** * *** * * * ** * *** * *
consensus_6363#0 ACTTCCCTAGTCTTTCGCCACTTACGGCCATGTCAATAAACTTTAACCGATTAATTTCAG 587
consensus_6363#1 AGATCGTAAAGGTTCTGTTACTTTTGGTAATGGTGG------------------------ 520
* ** * ** * **** ** ***
consensus_6363#0 TACATTTAAAAGGTCANGGGGAAGTTGCAATTGTNATTAAAGTAAAGT 635
consensus_6363#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||