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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 570 fasta sequence
[AACTCAAGCTGTAGATGAAATGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAATGCAGAAATTCGACGTTTGAGTGAACTTGTCGATAGTTATTCGCGTCCTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTGAATGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTGCTCGATGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGTAAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCATCTCGATTGTCGTAATTTGTGTGCAAATTTTCGCGAAGATATTCAGTTTCGTTTTTCTCTTAGTTTGGGAACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGGACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCATTGACTGTTGATTTGTTCCCTTCTCTTATGAGCCG]
[+] EMBL CD154027 [AACTCAAGCTGTAGATGAAATGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAATGCAGAAATTCGACGTTTGAGTGAACTTGTCGATAGTTATTCGCGTCCTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTGAATGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTGCTCGATGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGTAAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCATCTCGATTGTCGTAATTTGTGTGCAAATTTTCGCGAAGATATTCAGTTTCGTTTTTCTCTTAGTTTGGGAACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGGACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCATTGACTGTTGATTTGTTCCCTTCTCTTATGAGCCG]
[-] EMBL CD131804 [ TAGTTATTCGCGTCCTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTGAACGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTGCTCGATGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGTAAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCATCTCGATTGTCGTAATTTGTGTGCAAATTTTCGCGAAGATATTCAGTTTCGTTTTTCTCTTAGTTTGGGAACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGGACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCATTGACTGTTGATTTGTTCCCTTCTCT ]
consensusID : consensus_6365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 470 fasta sequence
[AAATTTAGGTGGAGATCCACATTCAGGTCCTCCTGGAGCAGCTACAAGTATTGGGTCTCCTTTGTCAGCAGTGGCCTATATGGCTGAGGGTTGGCAAGACAGACTCGTGGAATTTACAAATTTCGAAACTGTTTTCGAGAAAAATCTTTCAGAGTCTGCTACTCGTACAAAATTTGCAGCCCATTCTGAACAAGGCAAGGATGTGGTGAATAGAGTCCGTACAATCATGGAAAATATCTATGAGACAACAGTTGAAGAAAAAGATGCTGCTGTTCGTTGTCGTCGTCTTTCTCAAGCACATCTTGAAGAGGTACGTGCTCGGNTGATGAAGACAAACTCAGGCTGTAGATGAAAAGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAAAGCAGAAATTCGACGTTNGAGTGAACTTGTCGATAGTNATTCGCGTCCCTTCCANCAATCACNA]
[+] EMBL CD194126 [AAATTTAGGTGGAGATCCACATTCAGGTCCTCCTGGAGCAGCTACAAGTATTGGGTCTCCTTTGTCAGCAGTGGCCTATATGGCTGAGGGTTGGCAAGACAGACTCGTGGAATTTACAAATTTCGAAACTGTTTTCGAGAAAAATCTTTCAGAGTCTGCTACTCGTACAAAATTTGCAGCCCATTCTGAACAAGGCAAGGATGTGGTGAATAGAGTCCGTACAATCATGGAAAATATCTATGAGACAACAGTTGAAGAAAAAGATGCTGCTGTTCGTTGTCGTCGTCTTTCTCAAGCACATCTTGAAGAGGTACGTGCTCGGNTGATGAAGACAAACTCAG ]
[-] EMBL CD178170 [ GAGTCTGCTACTCGCACAAAATGCGCAGCCCATTCTGAACAAGGCAAGAATGTGGTGAATAGAGTCCGTACAATCATGGAAAAGATCCATGAGACAACAGTTGAAGAAAAAGATGCTGCTGTTCGTTGTCGTCGTCTTTCTCAAGCACATCTTGAAGAGGTACGTGCTCGGTTGATGAAGAC AACTCAAGCTGTAGATGAAAAGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGCTAGTGCATTAAAAGCAGAAATTCGACGTTNGAGTGAACTTGTCGATAGTNATTCGCGTCCCTTCCANCAATCACNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6365#0 AACTCAAGCTGTAGATGAAATGCTTCATGCTAGTTTGGCACGTGTTGAAGCTCAAGTTGC 60
consensus_6365#1 ------AAATTTAGGTGGAGATCCACATTCAGGTC---CTCCTGGAGCAGCTACAAGTAT 51
* * *** ** * * *** * ** * * ** * **** * *
consensus_6365#0 TAGTGCATTAAATGCAGAAATTCGACGTTTGAGTGAAC-TTGTCGATAGTTATTCGCGTC 119
consensus_6365#1 TGGGTCTCCTTTGTCAGCAGTGGCCTATATGGCTGAGGGTTGGCAAGACAGACTCGTGGA 111
* * * *** * * * ** *** *** * * * * *** *
consensus_6365#0 CTTTCCATCCAGATCCAGCTTTGATTCACGTATACAAGCGGGAACTAAATACTCATGTTG 179
consensus_6365#1 ATTTACA---------AATTTCGAAAC-TGTTTTCGAG---------AAAAATCTTTCAG 152
*** ** * ** ** * ** * * ** ** * ** * *
consensus_6365#0 AATGTGAATTAGGCAGAAAACTTACTGAAGCTTGCTCTAGTGATATTCTTAATGAAGTTG 239
consensus_6365#1 AGTCTGCTACTCGTACAAAATTTGC---AGCCCATTCTGAACAAGGCAAGGATGTGGTGA 209
* * ** * * **** ** * *** *** * *** **
consensus_6365#0 CTCGA-TGTGAACAATTAATGATGAATAAACATGCGGCAATTGTTTCAGACGAAGCTTGT 298
consensus_6365#1 ATAGAGTCCGTACAATCA-TGGAAAATATCTATGAGACAACAGTTGAAGAAAAAGATGCT 268
* ** * * ***** * ** **** *** * *** *** *** *** * *
consensus_6365#0 AAAAATCGTATACTTCAGCTAGTTGATCCTACTGCATTTACTCCGGAATTCCAT-CTCGA 357
consensus_6365#1 GCTGTTCGTTGTCGTCGTCT------TTCTCAAGCACATCTTGAAGAGGTACGTGCTCGG 322
**** * ** ** * ** *** * * ** * * * ****
consensus_6365#0 TTGTCGTAATTTGTGTGCAAATTTTCGC-GAAGATATTCAGTTTCGTTTTTCTCTTAGTT 416
consensus_6365#1 NTGATGAAG-------ACAAACTCAGGCTGTAGATGAAAAGCTTCAT------GCTAGTT 369
** * * **** * ** * **** ** *** * *****
consensus_6365#0 TGGGA-ACGCTGTTTCAACGGTTGTCAGCCCCACGTCGTTCGACAAATAGTTATTATTGG 475
consensus_6365#1 TGGCACGTGTTGAAGCTCAAGTTGCTAGT---GCATTAAAAG-CAGAAATTCGACGTTNG 425
*** * * ** * **** ** * * * ** * * * ** *
consensus_6365#0 ACACAATCTGATGGAATTCCTTCTAGTTTGGTTAACTCTTCTATATTACCCAGATCTTCA 535
consensus_6365#1 AGTGAACTTGTCGATAGTNATTCGCGTCCCTTCCANCAATCACNA--------------- 470
* ** ** * * * *** ** * * ** *
consensus_6365#0 TTGACTGTTGATTTGTTCCCTTCTCTTATGAGCCG 570
consensus_6365#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||