These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TGGGTGGTGTAGTTGACTTGAGTTTTCCACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTTTAACGTACAGAAAAGAGACAGTGTCAATCAGTGTAATGAATGGAGAGTGGGTGAGAGAGCGATTGAGTGTGTGAGTGTGAGTGAGTGTGTGATTGAGTGATATGTGGGACTGAAGTAATGAATGTGATGTGTTGTGTGTGATTGGTTGGCGTGTTTGTGTGTGTGAGGTGCT] [+] EMBL CD134151 [TGGGTGGTGTAGTTGACTTGAGTTTTCCACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTTTAACGTACAGAAAAGAGACAGTGTCAATCAGTGTAATGAATGGAGAGTGGGTGAGAGAGCGATTGAGTGTGTGAGTGTGAGTGAGTGTGTGATTGAGTGATATGTGGGACTGAAGTAATGAATGTGATGTGTTGTGTGTGATTGGTTGGCGTGTTTGTGTGTGTGAGGTGCT] consensusID : consensus_6367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TGTTGTGTGTGTAATGTGTGTTGTTTGTGTTCTGCGTCTGCTGCATGTAGACAGTAGACAATGTCTGCTTATGCGTGAGACGAACAGCACACATGAGACACGCAGCCTGACACACTCGTTCTAAAATACATAAAAAAAAAGTCAAAAACACTCTGACTACAAAGGAATGCAACATAAAGCAAATGTGAGATTGAGAACTTGAATATGGATTGGCATATCAAGATAGTCTGCTGATTGTGCCAAGTGTCGTAATGGTAAAACCCTTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTA] [+] EMBL CD145527 [TGTTGTGTGTGTAATGTGTGTTGTTTGTGTTCTGCGTCTGCTGCATGTAGACAGTAGACAATGTCTGCTTATGCGTGAGACGAACAGCACACATGAGACACGCAGCCTGACACACTCGTTCTAAAATACATAAAAAAAAAGTCAAAAACACTCTGACTACAAAGGAATGCAACATAAAGCAAATGTGAGATTGAGAACTTGAATATGGATTGGCATATCAAGATAGTCTGCTGATTGTGCCAAGTGTCGTAATGGTAAAACCCTTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTA] consensusID : consensus_6367#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [TTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGCAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAACCAGTGTGAATACGAAGGAATCCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGAT] [-] EMBL CD084485 [TTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGCAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAACCAGTGTGAATACGAAGGAATCCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGAT] consensusID : consensus_6367#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [GAGGATTTCGCCCGGCCTGCAAGTATGGAATACAGAATTTCAAAAAAATTCACAATGAAACCGGGTCAACAAAAGATTTTTCTCCATCTGATTCCAATATTTTTACTACTGCAGTAACAACCCCATCGTACGCGAAAACGACATACTGCCAAGTCAGACATTAGAAATTTATCCAACTGAGCAGCTTTGAGCTACAAACCTACGTAAAGGATAGCTCCACCATATTCACAAGATTATACGTTCATGGAATATGTACTATGCTTAAGCCAATAGAAAATAATTCATAAAAGGAACCAC] [+] EMBL CD065460 [GAGGATTTCGCCCGGCCTGCAAGTATGGAATACAGAATTTCAAAAAAATTCACAATGAAACCGGGTCAACAAAAGATTTTTCTCCATCTGATTCCAATATTTTTACTACTGCAGTAACAACCCCATCGTACGCGAAAACGACATACTGCCAAGTCAGACATTAGAAATTTATCCAACTGAGCAGCTTTGAGCTACAAACCTACGTAAAGGATAGCTCCACCATATTCACAAGATTATACGTTCATGGAATATGTACTATGCTTAAGCCAATAGAAAATAATTCATAAAAGGAACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6367#1 ---------------------------TGTTGTGTGTGTAAT-GTGTGTTGTTTGTGTTC 32 consensus_6367#2 ----------------------TTTTCTACT-TATGAGTAATTGTGAGGTGATAGTGTG- 36 consensus_6367#0 TGGGTGGTGTAGTTGACTTGAGTTTTCCACT-TATGAGTAATTGTGAGGTGATAGTGTG- 58 consensus_6367#3 -------------------------------------------GAGGATTTCGCCCGGCC 17 * * * * consensus_6367#1 TGCGTCTGCTGCATGTAGACAGTAGACAAT-GTCTGCTTATGCGTGAGACGAACAGCACA 91 consensus_6367#2 TGGATTGATGGTATTGGATCAGGAAGCGAGAGGCAGAGAGAGATTGAGTAGTTTGTGGTT 96 consensus_6367#0 TGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTT 118 consensus_6367#3 TGCAAGTATGGAATACAGAATTTCAAAAAAATTCACAATGAAACCGGGTCAACAAAAGAT 77 ** * ** * * * consensus_6367#1 CATGAGACACGCAGCCTG-ACACACTCGTTCTAAAATACATAAAAAAAA-AGTCAA--AA 147 consensus_6367#2 CATCAGCGAT--TGGCTG-AGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAA--AA 151 consensus_6367#0 CATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCAT 178 consensus_6367#3 TTTTCTCCATCTGATTCC--AATATTTTTACTA--CTGCAGTAACAACCCCATCGTACGC 133 * * * * * * * * consensus_6367#1 ACACTCTGACTACAAAGGAATGCAACATAAAGCAAATGTGAGATTGAGAACTTGAATAT- 206 consensus_6367#2 CCAGTGTGAATACGAAGGAATCCAACATAGAGTATATGTGAGATTGTGAACTTGATTTT- 210 consensus_6367#0 GCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTTTAACGTA 238 consensus_6367#3 GAAAACGACATACTGCCAAGTCAGACATTAGAAATTTATCCAACTGAGCAGCTTTGAGCT 193 * * * * consensus_6367#1 --GGATTGGCATATCA--AGATAGTCTGCTGATTGTGC--CAAGTGTCGTAATGGTAAAA 260 consensus_6367#2 --GGATTGGCATATCG--AGATTGTCTGTTGATTGTGC--CAGGTGTCGTGATGGTCGAT 264 consensus_6367#0 CAGAAAAGAGACAGTGTCAATCAGTGTAATGAATGGAGAGTGGGTGAGAGAGCGATTGAG 298 consensus_6367#3 ACAAACCTACGTAAAG---GATAGCTCCACCA-TATTCACAAGATTATACGTTCATGGAA 249 * * * * * * * * consensus_6367#1 CCCTTTGACTTGAGTTT-TCTACTTATGAGTAAT-TGTGAGGT---GATAGTGTGTG-GA 314 consensus_6367#2 GTAGTTGACTTGAGTTT-TCTACTTATGAGTAAT-TGTGAGGT---GATAGTGTGTG-GA 318 consensus_6367#0 TGTGTGAGTGTGAGTGAGTGTGTGATTGAGTGATATGTGGGACTGAAGTAATGAATGTGA 358 consensus_6367#3 TATGT--ACTATGCTTAAGCCAATAGAAAATAATTCATAAAAG--GAACCAC-------- 297 * * * * ** * consensus_6367#1 TTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTA 360 consensus_6367#2 TTGAT----------------------------------------- 323 consensus_6367#0 TGTGTTGTGTGTGATTGGTTGGCGTGTTTGTGTGTGTGAGGTGCT- 403 consensus_6367#3 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||