cluster # 637

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Schistosoma mansoni
cluster # 637 cluster # 637 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_637#0 length = 333 sequences # 1

consensus_637#1 length = 330 sequences # 1

consensusID : consensus_637#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [TTAGGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATTGCACCATTTCTTAAACAATTACAGAGACAATATTGATTTTTATAATTGCTACAACAATGTTTAATTGTTTTTCCAGAAGCTCGAAAAGCAGTAAATACGCCAACTTTTTAAAATAACTCACATACACGCCTTCATGGTACAAACACTTGTTATTNGGCACTGTTAATTTCCGAACTGGCTGCATNGGGCCTGTGTCCAAAGGCGTGTATCAGTAGTAGTAGTAAATCACTGTGAAAACTCCGAGATGCCGTTATGACNTGCAAATAATAG]

[+] EMBL CD157953             [TTAGGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATTGCACCATTTCTTAAACAATTACAGAGACAATATTGATTTTTATAATTGCTACAACAATGTTTAATTGTTTTTCCAGAAGCTCGAAAAGCAGTAAATACGCCAACTTTTTAAAATAACTCACATACACGCCTTCATGGTACAAACACTTGTTATTNGGCACTGTTAATTTCCGAACTGGCTGCATNGGGCCTGTGTCCAAAGGCGTGTATCAGTAGTAGTAGTAAATCACTGTGAAAACTCCGAGATGCCGTTATGACNTGCAAATAATAG]




>consensus_637#0
TTAGGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGT
ATTGCACCATTTCTTAAACAATTACAGAGACAATATTGATTTTTATAATTGCTACAACAA
TGTTTAATTGTTTTTCCAGAAGCTCGAAAAGCAGTAAATACGCCAACTTTTTAAAATAAC
TCACATACACGCCTTCATGGTACAAACACTTGTTATTNGGCACTGTTAATTTCCGAACTG
GCTGCATNGGGCCTGTGTCCAAAGGCGTGTATCAGTAGTAGTAGTAAATCACTGTGAAAA
CTCCGAGATGCCGTTATGACNTGCAAATAATAG

consensusID : consensus_637#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [GGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATCGCACCATTTATTAATACAATTACAGAGATAATATTGATTTTTATTATTGCTACAACATGTTTCATTGTTTTTCCAGATGCTCGAAAAGCAGTAAATACGCCAACTTTTTATATTATTCTATTTATCGCCTTCATGGTACATACACTGTTATTGGCATTGTTAATTTCCGATCTGGCTGCATGGGCCTGGTGTCCAAGGCCTGGTATCAGTAGTAGTAGTAAATCCATGTTGAAAACTCCGAGAAGCCGTTATGACTGGCGACATATAGTG]

[-] EMBL CD158150             [GGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATCGCACCATTTATTAATACAATTACAGAGATAATATTGATTTTTATTATTGCTACAACATGTTTCATTGTTTTTCCAGATGCTCGAAAAGCAGTAAATACGCCAACTTTTTATATTATTCTATTTATCGCCTTCATGGTACATACACTGTTATTGGCATTGTTAATTTCCGATCTGGCTGCATGGGCCTGGTGTCCAAGGCCTGGTATCAGTAGTAGTAGTAAATCCATGTTGAAAACTCCGAGAAGCCGTTATGACTGGCGACATATAGTG]




>consensus_637#1
GGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATC
GCACCATTTATTAATACAATTACAGAGATAATATTGATTTTTATTATTGCTACAACATGT
TTCATTGTTTTTCCAGATGCTCGAAAAGCAGTAAATACGCCAACTTTTTATATTATTCTA
TTTATCGCCTTCATGGTACATACACTGTTATTGGCATTGTTAATTTCCGATCTGGCTGCA
TGGGCCTGGTGTCCAAGGCCTGGTATCAGTAGTAGTAGTAAATCCATGTTGAAAACTCCG
AGAAGCCGTTATGACTGGCGACATATAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_637#0      TTAGGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGT 60
consensus_637#1      ---GGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGT 57
                        *********************************************************

consensus_637#0      ATTGCACCATTTCTTAA-ACAATTACAGAGACAATATTGATTTTTATAATTGCTACAACA 119
consensus_637#1      ATCGCACCATTTATTAATACAATTACAGAGATAATATTGATTTTTATTATTGCTACAACA 117
                     ** ********* **** ************* *************** ************

consensus_637#0      ATGTTTAATTGTTTTTCCAGAAGCTCGAAAAGCAGTAAATACGCCAACTTTTTAAAATAA 179
consensus_637#1      -TGTTTCATTGTTTTTCCAGATGCTCGAAAAGCAGTAAATACGCCAACTTTTTATATTAT 176
                      ***** ************** ******************************** * ** 

consensus_637#0      CTCACATACACGCCTTCATGGTACAAACACTTGTTATTNGGCACTGTTAATTTCCGAACT 239
consensus_637#1      TCTATTTAT-CGCCTTCATGGTACATACACT-GTTATTGG-CATTGTTAATTTCCGATCT 233
                        *  **  *************** ***** ****** * ** ************* **

consensus_637#0      GGCTGCATNGGGCCTGTGTCCAAAGGCGTGTATCAGTAGTAGTAGTAAATCACTGT-GAA 298
consensus_637#1      GGCTGCATGGGCCTGGTGTCCAAGGCCTGGTATCAGTAGTAGTAGTAAATCCATGTTGAA 293
                     ******** ** *  ******** * *  **********************  *** ***

consensus_637#0      AACTCCGAGATGCCGTTATGACNTGCAAATAATAG-- 333
consensus_637#1      AACTCCGAGAAGCCGTTATGACTGGCGACATATAGTG 330
                     ********** ***********  ** *   ****