These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [TTAGGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATTGCACCATTTCTTAAACAATTACAGAGACAATATTGATTTTTATAATTGCTACAACAATGTTTAATTGTTTTTCCAGAAGCTCGAAAAGCAGTAAATACGCCAACTTTTTAAAATAACTCACATACACGCCTTCATGGTACAAACACTTGTTATTNGGCACTGTTAATTTCCGAACTGGCTGCATNGGGCCTGTGTCCAAAGGCGTGTATCAGTAGTAGTAGTAAATCACTGTGAAAACTCCGAGATGCCGTTATGACNTGCAAATAATAG] [+] EMBL CD157953 [TTAGGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATTGCACCATTTCTTAAACAATTACAGAGACAATATTGATTTTTATAATTGCTACAACAATGTTTAATTGTTTTTCCAGAAGCTCGAAAAGCAGTAAATACGCCAACTTTTTAAAATAACTCACATACACGCCTTCATGGTACAAACACTTGTTATTNGGCACTGTTAATTTCCGAACTGGCTGCATNGGGCCTGTGTCCAAAGGCGTGTATCAGTAGTAGTAGTAAATCACTGTGAAAACTCCGAGATGCCGTTATGACNTGCAAATAATAG] consensusID : consensus_637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [GGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATCGCACCATTTATTAATACAATTACAGAGATAATATTGATTTTTATTATTGCTACAACATGTTTCATTGTTTTTCCAGATGCTCGAAAAGCAGTAAATACGCCAACTTTTTATATTATTCTATTTATCGCCTTCATGGTACATACACTGTTATTGGCATTGTTAATTTCCGATCTGGCTGCATGGGCCTGGTGTCCAAGGCCTGGTATCAGTAGTAGTAGTAAATCCATGTTGAAAACTCCGAGAAGCCGTTATGACTGGCGACATATAGTG] [-] EMBL CD158150 [GGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGTATCGCACCATTTATTAATACAATTACAGAGATAATATTGATTTTTATTATTGCTACAACATGTTTCATTGTTTTTCCAGATGCTCGAAAAGCAGTAAATACGCCAACTTTTTATATTATTCTATTTATCGCCTTCATGGTACATACACTGTTATTGGCATTGTTAATTTCCGATCTGGCTGCATGGGCCTGGTGTCCAAGGCCTGGTATCAGTAGTAGTAGTAAATCCATGTTGAAAACTCCGAGAAGCCGTTATGACTGGCGACATATAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_637#0 TTAGGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGT 60 consensus_637#1 ---GGTTTACGACGTCCAAGAATGCATTCTATTGAGAAATTGTCATGGTCCACACCACGT 57 ********************************************************* consensus_637#0 ATTGCACCATTTCTTAA-ACAATTACAGAGACAATATTGATTTTTATAATTGCTACAACA 119 consensus_637#1 ATCGCACCATTTATTAATACAATTACAGAGATAATATTGATTTTTATTATTGCTACAACA 117 ** ********* **** ************* *************** ************ consensus_637#0 ATGTTTAATTGTTTTTCCAGAAGCTCGAAAAGCAGTAAATACGCCAACTTTTTAAAATAA 179 consensus_637#1 -TGTTTCATTGTTTTTCCAGATGCTCGAAAAGCAGTAAATACGCCAACTTTTTATATTAT 176 ***** ************** ******************************** * ** consensus_637#0 CTCACATACACGCCTTCATGGTACAAACACTTGTTATTNGGCACTGTTAATTTCCGAACT 239 consensus_637#1 TCTATTTAT-CGCCTTCATGGTACATACACT-GTTATTGG-CATTGTTAATTTCCGATCT 233 * ** *************** ***** ****** * ** ************* ** consensus_637#0 GGCTGCATNGGGCCTGTGTCCAAAGGCGTGTATCAGTAGTAGTAGTAAATCACTGT-GAA 298 consensus_637#1 GGCTGCATGGGCCTGGTGTCCAAGGCCTGGTATCAGTAGTAGTAGTAAATCCATGTTGAA 293 ******** ** * ******** * * ********************** *** *** consensus_637#0 AACTCCGAGATGCCGTTATGACNTGCAAATAATAG-- 333 consensus_637#1 AACTCCGAGAAGCCGTTATGACTGGCGACATATAGTG 330 ********** *********** ** * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||