cluster # 6373

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Schistosoma mansoni
cluster # 6373 cluster # 6373 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6373#0 length = 461 sequences # 3

consensus_6373#1 length = 274 sequences # 1

consensusID : consensus_6373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 461
fasta sequence

                              [GGNNGAAAGCCTGAAAAATGCACATGACAACATAAATAAACATACAGTTTGGTAGCAAAAAAAAGATACCTAAATAGAATAATAACACTAATCAATAAATTTACCAACTTATATTATTAATCCCTTTGAATGAGTGTGATAAAAATAAAGTATTGGGTCAAAATAAAATGAGATAAAAGATTATATATTACTAACAAATAATATCAGTAGTTAAAACAAAATCAATAAACGATAATTGATCAATTNTGCAATTAAAAAATAACAAACAAACAAATGCTAAACTCGATTAAATAATAAGTTATATGAATAACTAAACAATATTATTATACAGTCTCAAATCATAGATTTTCTTGTATAATTATATAAGTAAATAGATTAGATAAATAAGAGACTAAAACAGTTTAATGCAGTATAAGAAAAAAAATGTGACAAGCGTAAGTGTAAGTTCAACGGAACCCACC]

[+] EMBL CD145256             [GGNNGAAAGCCTGAAAAATGCACATGACAACATAAATAAACATACAGTTTGGTAGCAAAAAAAAGATACCTAAATAGAATAATAACACTAATCAATAAATTTACCAACTTATATTATTAATCCCTTTGAATGAGTGTGATAAAAATAAAGTATTGGGTCAAAATAAAATGAGATAAAAGATTATATATTACTAACAAATAATATCAGTAGTTAAAACAAAATCAATAAACGATAATTGATCAATTTTGCAATTAAAAAATAACAAACAAACAAATGCTAAACTCGATTAAATAATAAGTTATATGAATAACTAAACAATATTATTATACAGTCTCAAATCATAGATTTTCTTGTATAATTATATAAGTAAATAGATTAGATAAATAAGAGACTAAAACAGTTTAATGCAGTATAAG AAAAAAATGTGACAAGCGTAAGTGTAAGTTCAACGGAACCCAC ]
[-] EMBL CD092795             [                                                                                                                                                                                  GATTATATATTACTANCAAATAATATCAGTAGTTANAACAAAATCAATAAACGATAATTGATCAATTNTGCAATTAAAAAATAACAAACAAACAAATGCTAAACTCGATTAAATAATAAGTTATATGAATAACTAAACAATATTATTATACAGTCTCAAATCATAGATTTTCTTGTATAATTATATAAGTAAATAGATTAGATAAATAAGAGACTAAAACAGTTTAATGCAGTATAAGAAAAAAAATGTGACAAGCGTAAGTGTAAGTTCAACGGAACCCACC]
[-] EMBL CD092797             [                                                                                                                                                                                                           TCAGTAGTTAAANCANAATCAATAANCGATAATTGATCAATTNTGCAATTAAAAAATAACAAACAAACAAATGCTAAACTCGATTAAATAATAAGTTATATGAATAACTAAACAATATTATTATACAGTCTCAAATCATAGATTTTCTTGTATAATTATATAAGTAAATAGATTAGATAAATAAGAGACTAAAACAGTTTAATGCAGTATAAGAAAAAAAATGTGACAAGCGTAAGTGTAAGTTCAACGGAACCCACC]




>consensus_6373#0
GGNNGAAAGCCTGAAAAATGCACATGACAACATAAATAAACATACAGTTTGGTAGCAAAA
AAAAGATACCTAAATAGAATAATAACACTAATCAATAAATTTACCAACTTATATTATTAA
TCCCTTTGAATGAGTGTGATAAAAATAAAGTATTGGGTCAAAATAAAATGAGATAAAAGA
TTATATATTACTAACAAATAATATCAGTAGTTAAAACAAAATCAATAAACGATAATTGAT
CAATTNTGCAATTAAAAAATAACAAACAAACAAATGCTAAACTCGATTAAATAATAAGTT
ATATGAATAACTAAACAATATTATTATACAGTCTCAAATCATAGATTTTCTTGTATAATT
ATATAAGTAAATAGATTAGATAAATAAGAGACTAAAACAGTTTAATGCAGTATAAGAAAA
AAAATGTGACAAGCGTAAGTGTAAGTTCAACGGAACCCACC

consensusID : consensus_6373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [ATCCACCGCTTAGTATTCGGCACGAGGAATGTAGCGTTCGAATGCTTGGATTTGCGGGGGTTCAATCGAGGGCAGAGATTCTCCGCGTTATCTCAATCGATCTAGGTTAGAAAGCCTCAATGGATGTCGATTAAAAGTTTAATAAGAATTTTTTTTTCTATTGGCTATTATAATCACCAATATTTAATTGCCCCCAGGTTTTCTTTATTGCAAAGAATCTAAACCCTCCTTATTTTATTTCGGTTTGGCAAGCCGGGGGGTCCGTTGAACTTAC]

[+] EMBL BE431260             [ATCCACCGCTTAGTATTCGGCACGAGGAATGTAGCGTTCGAATGCTTGGATTTGCGGGGGTTCAATCGAGGGCAGAGATTCTCCGCGTTATCTCAATCGATCTAGGTTAGAAAGCCTCAATGGATGTCGATTAAAAGTTTAATAAGAATTTTTTTTTCTATTGGCTATTATAATCACCAATATTTAATTGCCCCCAGGTTTTCTTTATTGCAAAGAATCTAAACCCTCCTTATTTTATTTCGGTTTGGCAAGCCGGGGGGTCCGTTGAACTTAC]




>consensus_6373#1
ATCCACCGCTTAGTATTCGGCACGAGGAATGTAGCGTTCGAATGCTTGGATTTGCGGGGG
TTCAATCGAGGGCAGAGATTCTCCGCGTTATCTCAATCGATCTAGGTTAGAAAGCCTCAA
TGGATGTCGATTAAAAGTTTAATAAGAATTTTTTTTTCTATTGGCTATTATAATCACCAA
TATTTAATTGCCCCCAGGTTTTCTTTATTGCAAAGAATCTAAACCCTCCTTATTTTATTT
CGGTTTGGCAAGCCGGGGGGTCCGTTGAACTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6373#0      GGNNGAAAGCCTGAAAAATGCACATGACAACATAAATAAACATACAGTTTGGTAGCAAAA 60
consensus_6373#1      ------------------------------------------------------------
                                                                                  

consensus_6373#0      AAAAGATACCTAAATAGAATAATAACACTAATCAATAAATTTACCAACTTATATTATTAA 120
consensus_6373#1      -----------------------------------------ATCCACCGCTTAGTATTCG 19
                                                                 *** *   ** ****  

consensus_6373#0      TCCCTTTGAATGAGTGTGATAAAAATAAAGTATTGGGTCAAAATAAAATGAGATAAAAGA 180
consensus_6373#1      GCACGAGGAATGTA-GCGTTCGAATGCTTGGATTTGCGGGGGTTCAATCGAGGGCAGAGA 78
                       * *   *****   * * *  **     * *** *       * **  ***   * ***

consensus_6373#0      TTATATATTACTAACAAATAATATCAGTAGTTAAAACAAAATCAATAAACGATAATTGAT 240
consensus_6373#1      TTCTCCGC-GTTATCTCAATCGATC--TAGGTTAGAAAGCCTCAATGGATG----TCGAT 131
                      ** *       ** *  *    ***  *** * * * *   *****  * *    * ***

consensus_6373#0      CAATTNTGCAATTAAAAAATAACAAACAAACAAATGCTAAACTCGATTAAATAATAAGTT 300
consensus_6373#1      TAAAAGTTTAATAAGAATTTTTTTTTCTATTGGCTATTATAATCACC--AATATTTAATT 189
                       **   *  *** * **  *      * *     *  ** * **     **** * * **

consensus_6373#0      ATATGAATAACTAAACAATATTATTATACAGTCTCAAATCATAGATTTTCTTGTATAATT 360
consensus_6373#1      GCCC--CCAGGTTTTCTTTATTGCAA-AGAATCT-AAACCCTCCTTATTTTATTTCGGTT 245
                              *  *   *  ****   * * * *** *** * *   * ** *  *    **

consensus_6373#0      ATATAAGTAAATAGATTAGATAAATAAGAGACTAAAACAGTTTAATGCAGTATAAGAAAA 420
consensus_6373#1      TGGCAAGCCGGGGGGTCCGTTGAACTTAC------------------------------- 274
                          ***      * *  * * **                                    

consensus_6373#0      AAAATGTGACAAGCGTAAGTGTAAGTTCAACGGAACCCACC 461
consensus_6373#1      -----------------------------------------