cluster # 6375

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6375 cluster # 6375 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6375#0 length = 502 sequences # 1

consensus_6375#1 length = 380 sequences # 3

consensusID : consensus_6375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [GGATAGATATGCACGTCATCAAAACAACATAACTAAATCTTTTTTTTAAATATAAGATCGCTTATTGTTATTTTTTATTGCATTACCAAATAAATCACATGTTAACATAGAAAATTCKMKGGTCTTAGTAATAGCAATAACTCATTTTACAGTGATAATCCTTGAAAGTCGAATATGAAATATGTAAATAAAATATTAATTCAATGAAAGTGGTATAATCCTATTTTTGGAATGTTCTACAAAATGTTAGCCTTTTTTCCCCTATTACTTCAAATCAACTAGTTAAATTCAGGTGCTTTTCATTTGTCAGAAATGTTTTGTGATAAAGTTCATCTAGAGGGATTACTAATATTTACTAATAAATTGGACTCTATTATTTCATGTCACGCGTATATATAGTTTACCGTGTTTTAGTATATATTCTACTACTCTACAACATATATTATCGTCTCTGATTTCGTCAATACTTGTGTATAAGCAATTACAATTATTATCTTTTAAG]

[+] EMBL AW061426             [GGATAGATATGCACGTCATCAAAACAACATAACTAAATCTTTTTTTTAAATATAAGATCGCTTATTGTTATTTTTTATTGCATTACCAAATAAATCACATGTTAACATAGAAAATTCKMKGGTCTTAGTAATAGCAATAACTCATTTTACAGTGATAATCCTTGAAAGTCGAATATGAAATATGTAAATAAAATATTAATTCAATGAAAGTGGTATAATCCTATTTTTGGAATGTTCTACAAAATGTTAGCCTTTTTTCCCCTATTACTTCAAATCAACTAGTTAAATTCAGGTGCTTTTCATTTGTCAGAAATGTTTTGTGATAAAGTTCATCTAGAGGGATTACTAATATTTACTAATAAATTGGACTCTATTATTTCATGTCACGCGTATATATAGTTTACCGTGTTTTAGTATATATTCTACTACTCTACAACATATATTATCGTCTCTGATTTCGTCAATACTTGTGTATAAGCAATTACAATTATTATCTTTTAAG]




>consensus_6375#0
GGATAGATATGCACGTCATCAAAACAACATAACTAAATCTTTTTTTTAAATATAAGATCG
CTTATTGTTATTTTTTATTGCATTACCAAATAAATCACATGTTAACATAGAAAATTCKMK
GGTCTTAGTAATAGCAATAACTCATTTTACAGTGATAATCCTTGAAAGTCGAATATGAAA
TATGTAAATAAAATATTAATTCAATGAAAGTGGTATAATCCTATTTTTGGAATGTTCTAC
AAAATGTTAGCCTTTTTTCCCCTATTACTTCAAATCAACTAGTTAAATTCAGGTGCTTTT
CATTTGTCAGAAATGTTTTGTGATAAAGTTCATCTAGAGGGATTACTAATATTTACTAAT
AAATTGGACTCTATTATTTCATGTCACGCGTATATATAGTTTACCGTGTTTTAGTATATA
TTCTACTACTCTACAACATATATTATCGTCTCTGATTTCGTCAATACTTGTGTATAAGCA
ATTACAATTATTATCTTTTAAG

consensusID : consensus_6375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 380
fasta sequence

                              [TTTTTTTCCCTATTACTTCAAATCAACTAGTTAAATTCAAGTGCTTTTCATTTGTCCAGAAATGTTTTGTGATAAAGTTCATCTAGAAGGATTACTAATAATTACTAATAAATTGACTCTATTATTTCATGTAACCCGTATATAATAGTTTATCCCTGTTTTTGTATTTTAATTTTCTACTCTTTCAACATTTAATTATTGTCTCTGATTTTCTTCAATACTTTTGTTTAAGCCAATTACAATTAATATCTTTTTAGAATACTGAGATAAAGTAACATTTTCATGTTTACTTTCGCTCATTCTTTCAAAAGATTATCATTCTCTCAAAAAAAGGGCGGCCGCTAATCGAATTTCCCGCGGCCAGACCATGGCGGCNCGGG]

[-] EMBL CD131977             [TTTTTTTCCCTATTACTTCAAATCAACTAGTTAAATTCAAGTGCTTTTCATTTGTCCAGAAATGTTTTGTGATAAAGTTCATCTAGAAGGATTACTAATAATTACTAATAAATTGACTCTATTATTTCATGTAACCCGTATATAATAGTTTATCCCTGTTTTTGTATTTTAATTTTCTACTCTTTCAACATTTAATTATTGTCTCTGATTTTCTTCAATACTTTTGTTTAAGCCAATTACAATTAATATCTTTTTAGAATACTGAGATAAAGTAACATTTTCATGTTTACTTTCGCTCATTCTTTCAAAAGATTATCATTCTCTCAAAAAAAGGGCGGCCGCTAATCGAATTTCCCGCGGCCAGACCATGGCGGCNCGGG]
[+] EMBL CD133889             [                TTCAAATCAACTAGTTAAATTCAAGTGCTTTTCATTTGTCCAGAAATGTTTTGTGATAAAGTTCATCTAGAAGGATTACTAATAATTACTAATAAATTGACTCTATTATTTCATGTAACCCGTATATAATAGTTTATCCCTGTTTTTGTATTTTAATTTTCTACTCTTTCAACATTTAATTATCGTCTCTGATTTTCTTCAATACTTTTGTTTAAGCCAATTACAATTAATATCTTTTTAGAATACTGAGATAAAGTAACATTTTCATGTTTACTTTCGCTCATTCTTTCAAAAGATca                                                                 ]
[-] EMBL CD131930             [                                                                                                      TACTAATAAATTGACTCTATTATTTCATGTAACCCGTATATAATAGTTTATCCCTGTTTTTGTATTTTAATTTTCTACTCTTTCAACATTTAATTATTGTCTCTGATTTTCTTCAATACTTTTGTTTAAGCCAATTACAATTAATATCTTTTTAGAATACTGAGATAAAGTAACATTTTCATGTTTACTTTCGCTCATTCTTTCAAAAGATTATCATTCTCTCAAAAAAAG                                               ]




>consensus_6375#1
TTTTTTTCCCTATTACTTCAAATCAACTAGTTAAATTCAAGTGCTTTTCATTTGTCCAGA
AATGTTTTGTGATAAAGTTCATCTAGAAGGATTACTAATAATTACTAATAAATTGACTCT
ATTATTTCATGTAACCCGTATATAATAGTTTATCCCTGTTTTTGTATTTTAATTTTCTAC
TCTTTCAACATTTAATTATTGTCTCTGATTTTCTTCAATACTTTTGTTTAAGCCAATTAC
AATTAATATCTTTTTAGAATACTGAGATAAAGTAACATTTTCATGTTTACTTTCGCTCAT
TCTTTCAAAAGATTATCATTCTCTCAAAAAAAGGGCGGCCGCTAATCGAATTTCCCGCGG
CCAGACCATGGCGGCNCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6375#0      GGATAGATATGCACGTCATCAAAACAACATAACTAAATCTTTTTTTTAAATATAAGATCG 60
consensus_6375#1      ------------------------------------------------------------
                                                                                  

consensus_6375#0      CTTATTGTTATTTTTTATTGCATTACCAAATAAATCACATGTTAACATAGAAAATTCKMK 120
consensus_6375#1      ------------------------------------------------------------
                                                                                  

consensus_6375#0      GGTCTTAGTAATAGCAATAACTCATTTTACAGTGATAATCCTTGAAAGTCGAATATGAAA 180
consensus_6375#1      ------------------------------------------------------------
                                                                                  

consensus_6375#0      TATGTAAATAAAATATTAATTCAATGAAAGTGGTATAATCCTATTTTTGGAATGTTCTAC 240
consensus_6375#1      ------------------------------------------------------------
                                                                                  

consensus_6375#0      AAAATGTTAGCCTTTTTTCCCCTATTACTTCAAATCAACTAGTTAAATTCAGGTGCTTTT 300
consensus_6375#1      ------------TTTTTTTCCCTATTACTTCAAATCAACTAGTTAAATTCAAGTGCTTTT 48
                                  ****** ******************************** ********

consensus_6375#0      CATTTGTC-AGAAATGTTTTGTGATAAAGTTCATCTAGAGGGATTACTAATATTTACTAA 359
consensus_6375#1      CATTTGTCCAGAAATGTTTTGTGATAAAGTTCATCTAGAAGGATTACTAATAATTACTAA 108
                      ******** ****************************** ************ *******

consensus_6375#0      TAAATTGGACTCTATTATTTCATGTCACGCGTATATA-TAGTTTA-CCGTGTTTTAGTAT 417
consensus_6375#1      TAAATTG-ACTCTATTATTTCATGTAACCCGTATATAATAGTTTATCCCTGTTTTTGTAT 167
                      ******* ***************** ** ******** ******* ** ****** ****

consensus_6375#0      AT-ATTCTACTACTCTA-CAACATATA-TTATCGTCTCTGATTT-CGTCAATACTTGTGT 473
consensus_6375#1      TTTAATTTTCTACTCTTTCAACATTTAATTATTGTCTCTGATTTTCTTCAATACTTTTGT 227
                       * * * * *******  ****** ** **** *********** * ********* ***

consensus_6375#0      ATAAGC-AATTACAATTATTATCTTTTAAG------------------------------ 502
consensus_6375#1      TTAAGCCAATTACAATTAATATCTTTTTAGAATACTGAGATAAAGTAACATTTTCATGTT 287
                       ***** *********** ******** **                              

consensus_6375#0      ------------------------------------------------------------
consensus_6375#1      TACTTTCGCTCATTCTTTCAAAAGATTATCATTCTCTCAAAAAAAGGGCGGCCGCTAATC 347
                                                                                  

consensus_6375#0      ---------------------------------
consensus_6375#1      GAATTTCCCGCGGCCAGACCATGGCGGCNCGGG 380