These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 498 fasta sequence [AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGATGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACAACAACCACTGGTTTAGATGAATCAGATCGAACTGCTTCACGTCGGAAACTCCTCGAGTTCTGAGTATTTTGTTGAAATATGTCCACATCTTTTGGTAGAAGGATAAGTCCACCATGTTTTTCCGTAGAATTTTCTGACGTCAAATTTGCGCACGTATTCGTGAGCGAACGTGAATTTCGTACATCGGG] [+] EMBL CD189855 [AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGATGAACTGACTTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATG ] [+] EMBL CD189825 [AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGATGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATG ] [+] EMBL CD165797 [ GAGATGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGT AAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACAACAACCACTGGTTTAGATGAATCAGATCGAACTGCTTCACGTCGGAAACTCCTCGAGTTCTGAGTATTTTGTTGAAATATGTCCACATCTTTTGGTAGAAGGATAAGTCCACCATGTTTTTCCGTAGAATTTTCTGACGTCAAATTTGCGCACGTATTCGTGAGCGAACGTGAATTTCGTACATCGGG] consensusID : consensus_6377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [ACTCGGCTTACTCTAGAGGATCCCATTGAGTGGCTGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACGACAACCACTGGTTTAGATAATCAGCTGATAAAATGAGTTTAGATAATAATCCAATGGAATAATAAGTACTAAATATCTACATTTTTCAAATATTCTAAGAGTGGGTTAAAACTACATAAACTATGGAAATGAAATCACTTACTATACCAATATGGAATCAACAACAGCATGAAACAGACGCTGAAAAAGTACTGCTGATAAGTACCTTCAAAAAAAAACACCCAAATATCCCTACAAACTGCCCCGAAATGCCCTGGTACGGCCGAGAGTGGGGAGAGTCAACTCTCCTTCT] [+] EMBL CD064728 [ACTCGGCTTACTCTAGAGGATCCCATTGAGTGGCTGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACGACAACCACTGGTTTAGATAATCAGCTGATAAAATGAGTTTAGATAATAATCCAATGGAATAATAAGTACTAAATATCTACATTTTTCAAATATTCTAAGAGTGGGTTAAAACTACATAAACTATGGAAATGAAATCACTTACTATACCAATATGGAATCAACAACAGCATGAAACAGACGCTGAAAAAGTACTGCTGATAAGTACCTTCAAAAAAAAACACCCAAATATCCCTACAAACTGCCCCGAAATGCCCTGGTACGGCCGAGAGTGGGGAGAGTCAACTCTCCTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6377#0 AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGA 60 consensus_6377#1 ------------------------------------------------------------ consensus_6377#0 TGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGT 120 consensus_6377#1 --------ACTCGGCTT-ACTCTAGAGGATCCCATTG--AGTGGCT--------GTGAAT 41 * * ** ** * * * ** * * ** * ** ** ** * * consensus_6377#0 CCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCG 180 consensus_6377#1 C-----------TGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCT 90 * * * **** *** * ** * * ** * * * *** consensus_6377#0 TGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAAC 240 consensus_6377#1 TGGACGGACGACAACCACTGGTTTAGATA---ATCAGCTGATAAAATGAGTTTAGATAAT 147 ***** * ** *** *** * ** ***** * * * * * ** consensus_6377#0 TCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCT 300 consensus_6377#1 --------AATCCAATGGAATAATA--AGTACTAA-ATATCTACATTTTTCAAATATTCT 196 **** ** * * ** *** *** ** * ** * * * * ** consensus_6377#0 TGGA-CGGACAACAACCAC-TGGTTTAGATGAATCAGATCGA--ACTGCTTCACGTCGGA 356 consensus_6377#1 AAGAGTGGGTTAAAACTACATAAACTATGGAAATGAAATCACTTACTATACCAATATGGA 256 ** ** * *** ** * ** *** * *** *** ** *** consensus_6377#0 AACTCCTCGAGTTCTGAGTATTTTGTTGAAATATGTCCACATCTTTTGGTAGAAGGATAA 416 consensus_6377#1 ATCAACAACAGCATGAAACAGACGCTGAAAAAGTACTGCTGATAAGTACCTTCAAAAAAA 316 * * * ** * * * *** * * * * ** consensus_6377#0 GTCCACCATGTTTTTCCGTAGAATTTTCTGACGTCAAATTTGCGCACGTATTCGTGAGCG 476 consensus_6377#1 AACACCCAAATATCCCTACAAACTGCCCCGAAAT-GCCCTGGTACGGCCGAGAGTGGGGA 375 * *** * * * * * * * ** * * * * *** * consensus_6377#0 AACGTGAATTTCGTACATCGGG 498 consensus_6377#1 GAGTCAACTCTCCTTCT----- 392 * * * ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||