cluster # 6384

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Schistosoma mansoni
cluster # 6384 cluster # 6384 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6384#0 length = 603 sequences # 2

consensus_6384#1 length = 550 sequences # 1
consensus_6384#2 length = 428 sequences # 1

consensusID : consensus_6384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 603
fasta sequence

                              [GCGTGGAAAACGACCAAATTCATACCCTTACAGATACTGATCTTGCTAGCTTTCCTTTGGACGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTATTAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTAAACTTTCAGATAACTTTCTACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGTTCCTATAATCCCAACTACTTCTACACATCAACTGGAACAATGGAGAGAAGACGCGAATTGCGAGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATTTAAAGTGTTATATATAACTCTGGACTTTTAGAAATTTCTGTTAACATGGTAAATATGGTAGCAGTATAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTAGACGTTTTTGCGAAGCTTCTTTTCAACACTGATTAGGTTAAACGTTTCCTGGCGTTTCTGGGTCTCTAAAGACTTTGACGAGAGATATTTTGGGACTTTCCCAACAACTAGNCACTCATTTGCTTTGTTTCTAGGGCTCCG]

[+] EMBL CD169204             [GCGTGGAAAACGACCAAATTCATACCCTTACAGATACTGATCTTGCTAGCTTTCCTTTGGACGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTATTAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTAAACTTTCAGATAACTTTCTACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGTTCCTATAATCCCAACTACTTCTACACATCAACTGGAACAATGGAGAGAAGACGCGAATTGCGAGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATTTAAAGTGTTATATATAACTCTGGACTTTTAGAAATTTCTGTTAACATGGTAAATATGGTAGCAGTATAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTAGACGTTTTTGCGAAGCTTCTTTTCAACACTGATTAGGTTAAACGTTTCCTGGCGTTTCTGGGTCTCTAAAGACTTTGACGAGAGATATTTTGGGACTTTCCCAACAACTAGNCACTCATTTGCTTTGTTTCTAGGGCTCCG]
[+] EMBL CD169781             [                      TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGGAAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTATTAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTAAACTTTCAGATAACTTTCTACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGTTCCTATAATCCCAACTACTTCTACACATCAACTGGAACAATGGAGAGAAGACGCGAATTGCGAGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATTTAAAGTGTTATATATAACTCTGGACTTTTAGAAATTTCTGTTAACATGGTAAATATGGTAGCAGTATAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTGGACGTTTTTGCGAAGCTTCTTTTCCACACTGAT                                                                                                            ]




>consensus_6384#0
GCGTGGAAAACGACCAAATTCATACCCTTACAGATACTGATCTTGCTAGCTTTCCTTTGG
ACGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTAT
TAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTAAACTTTCAGATAACTTTCTACC
TTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGTTCC
TATAATCCCAACTACTTCTACACATCAACTGGAACAATGGAGAGAAGACGCGAATTGCGA
GTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATTTAAAGTGTTA
TATATAACTCTGGACTTTTAGAAATTTCTGTTAACATGGTAAATATGGTAGCAGTATAGG
TTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTAGACGTTTTTGCGAAGCTT
CTTTTCAACACTGATTAGGTTAAACGTTTCCTGGCGTTTCTGGGTCTCTAAAGACTTTGA
CGAGAGATATTTTGGGACTTTCCCAACAACTAGNCACTCATTTGCTTTGTTTCTAGGGCT
CCG

consensusID : consensus_6384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGGAAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTCTTTTGGCCACTTTCCAGCAAGAAACTAAAATATGCTCTGATCGATTAACTGAGTTACGATTCAACGTTTGTGAACTATTGAAGAAATATGATCCTGTAAGCTTTAATTAATTAAATAATGTTATCGCAGAAATAATAGGTCAGTACTTATGATCTCAGTAATTAATACTCTTTTAAAGATAAAAACAAATGGTCACAATAATATGTTCATTACGTGCAGTGTTTAACGCTGTACAAAGAAAGCTGAGTTCAAAATACTTGTTTCATTAATTCTAAGTTTTAATTAGTACTATTTTCAGTCCAAATTGTACATTTCACCATACATTAACGTACGCCTGTTACACCTTATGGAGGAGCATAGGCCAACCATCAGAATTCTCCATTCAACTCTGTCCTGGACAATCCTTCCCAGTTGTTTTCAGTTGCTATTCGCCCTTTTGATTTCTGCTTACAATTCTCGACGTAGTATATTCT]

[+] EMBL CD169840             [TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGGAAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTCTTTTGGCCACTTTCCAGCAAGAAACTAAAATATGCTCTGATCGATTAACTGAGTTACGATTCAACGTTTGTGAACTATTGAAGAAATATGATCCTGTAAGCTTTAATTAATTAAATAATGTTATCGCAGAAATAATAGGTCAGTACTTATGATCTCAGTAATTAATACTCTTTTAAAGATAAAAACAAATGGTCACAATAATATGTTCATTACGTGCAGTGTTTAACGCTGTACAAAGAAAGCTGAGTTCAAAATACTTGTTTCATTAATTCTAAGTTTTAATTAGTACTATTTTCAGTCCAAATTGTACATTTCACCATACATTAACGTACGCCTGTTACACCTTATGGAGGAGCATAGGCCAACCATCAGAATTCTCCATTCAACTCTGTCCTGGACAATCCTTCCCAGTTGTTTTCAGTTGCTATTCGCCCTTTTGATTTCTGCTTACAATTCTCGACGTAGTATATTCT]




>consensus_6384#1
TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGGAAGACTTCTTCGATCGCTATGA
ACAAGGTCTCCGATCTCTTTTGGCCACTTTCCAGCAAGAAACTAAAATATGCTCTGATCG
ATTAACTGAGTTACGATTCAACGTTTGTGAACTATTGAAGAAATATGATCCTGTAAGCTT
TAATTAATTAAATAATGTTATCGCAGAAATAATAGGTCAGTACTTATGATCTCAGTAATT
AATACTCTTTTAAAGATAAAAACAAATGGTCACAATAATATGTTCATTACGTGCAGTGTT
TAACGCTGTACAAAGAAAGCTGAGTTCAAAATACTTGTTTCATTAATTCTAAGTTTTAAT
TAGTACTATTTTCAGTCCAAATTGTACATTTCACCATACATTAACGTACGCCTGTTACAC
CTTATGGAGGAGCATAGGCCAACCATCAGAATTCTCCATTCAACTCTGTCCTGGACAATC
CTTCCCAGTTGTTTTCAGTTGCTATTCGCCCTTTTGATTTCTGCTTACAATTCTCGACGT
AGTATATTCT

consensusID : consensus_6384#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [ATTTGACAATAGCTGCATGTACACTCCAATAATAGAGGAATGAGTAAAGCATGGGAATATTACAAAATGAGAGAAATTTGAGCGAAAGGATAATTTATTCGCAGAGTGATCGAATACATGAGATAAAAAAATGGTATACAATGATCTTGTTGACCATAATAATTAAAAAAAAACACGTTTGGCTGCCTTTAATACAGTTAAATTAATCTTTATTAAGGAAATTTCTGATATAATTATCAACTTCTTCACCGTCGCTCAATGGTTCAGTAAAGCTAGGATCATATTTCTTCAATAGTTCACAAACGTTGAATCGTAACTCAGTTAATCGATCAGAGCATATTTTAGTTTCTTGCTGGAAAGTGGCCAAAAGAGATCGGAGACCTTGTTCATAGCGATCGAAGAAGTCTTCCAAAGGAAAGCTAGCAAGA]

[+] EMBL CD117099             [ATTTGACAATAGCTGCATGTACACTCCAATAATAGAGGAATGAGTAAAGCATGGGAATATTACAAAATGAGAGAAATTTGAGCGAAAGGATAATTTATTCGCAGAGTGATCGAATACATGAGATAAAAAAATGGTATACAATGATCTTGTTGACCATAATAATTAAAAAAAAACACGTTTGGCTGCCTTTAATACAGTTAAATTAATCTTTATTAAGGAAATTTCTGATATAATTATCAACTTCTTCACCGTCGCTCAATGGTTCAGTAAAGCTAGGATCATATTTCTTCAATAGTTCACAAACGTTGAATCGTAACTCAGTTAATCGATCAGAGCATATTTTAGTTTCTTGCTGGAAAGTGGCCAAAAGAGATCGGAGACCTTGTTCATAGCGATCGAAGAAGTCTTCCAAAGGAAAGCTAGCAAGA]




>consensus_6384#2
ATTTGACAATAGCTGCATGTACACTCCAATAATAGAGGAATGAGTAAAGCATGGGAATAT
TACAAAATGAGAGAAATTTGAGCGAAAGGATAATTTATTCGCAGAGTGATCGAATACATG
AGATAAAAAAATGGTATACAATGATCTTGTTGACCATAATAATTAAAAAAAAACACGTTT
GGCTGCCTTTAATACAGTTAAATTAATCTTTATTAAGGAAATTTCTGATATAATTATCAA
CTTCTTCACCGTCGCTCAATGGTTCAGTAAAGCTAGGATCATATTTCTTCAATAGTTCAC
AAACGTTGAATCGTAACTCAGTTAATCGATCAGAGCATATTTTAGTTTCTTGCTGGAAAG
TGGCCAAAAGAGATCGGAGACCTTGTTCATAGCGATCGAAGAAGTCTTCCAAAGGAAAGC
TAGCAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6384#0      GCGTGGAAAACGACCAAATTCATACCCTTACAGATACTGATCTTGCTAGCTTTCCTTTGG 60
consensus_6384#1      ----------------------TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGG 38
consensus_6384#2      ------------------------------------------------------------
                                                                                  

consensus_6384#0      ACGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTAT 120
consensus_6384#1      AAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTCTTTTGGCCACTTTCCAGCAAG 98
consensus_6384#2      ------------------------------------------------------------
                                                                                  

consensus_6384#0      TAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTA---AACTTTCAGATAACTTTCT 177
consensus_6384#1      AAACTAAAATATGCTCTGATCGATTAACTGAGTTACGATTCAACGTTTGTG-AACTATTG 157
consensus_6384#2      ---ATTTGACAATAGCTGCATGTACACTCCAATAATAGAGGAATGAGTAAA--GCATGGG 55
                              * *              *      * *      **           *     

consensus_6384#0      ACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGT 237
consensus_6384#1      AAGAAATATGATCCTGTAAGCTTTAATTAATTAAATAATGTTATCGCAGAAATAATAGGT 217
consensus_6384#2      AATATTACAAAATGAGAGAAATTTGAGCGAAAGGATAATTTATTCGCAGAGTGATCGAAT 115
                      *         *       *  *** *   *    *          *       *     *

consensus_6384#0      T----CCTATAATCCCAACTACTTCTACACATCAA-CTGGAACAATGGAGAGAAGACGCG 292
consensus_6384#1      CAGTACTTATGATCTCAGTAATTAATACTCTTTTA-AAGATAAAAACAAATGGTCACAAT 276
consensus_6384#2      A------CATGAGATAAAAAAATGGTATACAATGATCTTGTTGACCATAATAATTAAAAA 169
                              ** *    *   * *  **  *    *        *    *      *    

consensus_6384#0      AAT-TGCG-AGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATT 350
consensus_6384#1      AATATGTTCATTACGTGCAGTGTTTAACG-CTGTACAAAGAAAGCTGAGTTCAAAATACT 335
consensus_6384#2      AAAACACG----TTTGGCTGCCTTTAATA--CAGTTAAATTAATCTTTATTAAGGAAATT 223
                      **              **    *****          *   *          *    * *

consensus_6384#0      TAAAGTGTTATATATAACT-CTGGACTTTTAGA-AAT--TTCTGTTAACATGGTA-AATA 405
consensus_6384#1      TGTTTCATTAATTCTAAGT-TTTAATTAGTACT-ATT--TTCAGTCCAAATTGTA-CATT 390
consensus_6384#2      TCTGATATAATTATCAACTTCTTCACCGTCGCTCAATGGTTCAGTAAAGCTAGGATCATA 283
                      *      * *     ** *  *  *         * *  *** **  *  * * *  ** 

consensus_6384#0      TGGTAGCAGTA-TAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTAGA 464
consensus_6384#1      T-----CACCA-TACATTAACGTACGCCTGTTAC-ACCTTATGGAGGAGCATA----GGC 439
consensus_6384#2      TTTCTTCAATAGTTCACAAACGTTGAATCGTAAC--TCAGTTAATCGATCA------GAG 335
                      *     **  * *     **  *       * **       *       **         

consensus_6384#0      CGTTTTTGCGAAGCTTCTTTTCAACACTGATTAGGTTAAACGTTTCCTGGCGTTTCTGGG 524
consensus_6384#1      CAACCATCAGAATTCTCCATTCAACTCTGTCCTGGACAATCCTTCCCAGTTGTTTTCAG- 498
consensus_6384#2      CATATTTT--AGTTTCTTGCTGGAAAGTGGCCAAAAGAGATCGGAGACCTTGTTCATAGC 393
                      *     *   *         *  *   **        *             ***    * 

consensus_6384#0      TCTCTAAAGACTTTGACGAGAGATATTTTGGGACTTTCCCAACAACTAGNCACTCATTTG 584
consensus_6384#1      TTGCTATTCGCCCTTTTGATTTCTGCTT--ACAATTCTCGACGTAGTATATTCT------ 550
consensus_6384#2      GATCGAAGAAGTCTTCCAAAGGAAAGCTAGCAAGA------------------------- 428
                         * *       *    *        *    *                           

consensus_6384#0      CTTTGTTTCTAGGGCTCCG 603
consensus_6384#1      -------------------
consensus_6384#2      -------------------