These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_639#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CAGGAAGTTAAACACAGTCAGGGCTTGGAGAAGAAAGAACTTGGAAAAAGACGATGGGGTGTGGACAACCAAGAGTTGGGCATTTTTGCCCCCATTTAATAGGATGTTCCAAAACCGGAGGGTCCATAACTTGCCCACAATTGAACACTTTTCTGGCAAACCGTAACTTAAGGGAAACCCCCATTGCGCGCGCAAAAACCCGGGAAAAAGAGATCACTAA] [+] EMBL AI964703 [CAGGAAGTTAAACACAGTCAGGGCTTGGAGAAGAAAGAACTTGGAAAAAGACGATGGGGTGTGGACAACCAAGAGTTGGGCATTTTTGCCCCCATTTAATAGGATGTTCCAAAACCGGAGGGTCCATAACTTGCCCACAATTGAACACTTTTCTGGCAAACCGTAACTTAAGGGAAACCCCCATTGCGCGCGCAAAAACCCGGGAAAAAGAGATCACTAA] consensusID : consensus_639#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [ATGAGGAAGTTAAACACAGTGAGGGCTTGGAGAAGAAAGAACTGGAAAAAGACGATGGGTGTGGACAACCAAGATGTTGGGATTTTTGCTCTCATTTAATAGAATGTTTCAAAACTGGAGGTTCTAATACTTGGCCAAATGGAAACAATTCTTGCAAAACCGTAACATTAAGGAAAAACCCAATTATCTCT] [+] EMBL AI964705 [ATGAGGAAGTTAAACACAGTGAGGGCTTGGAGAAGAAAGAACTGGAAAAAGACGATGGGTGTGGACAACCAAGATGTTGGGATTTTTGCTCTCATTTAATAGAATGTTTCAAAACTGGAGGTTCTAATACTTGGCCAAATGGAAACAATTCTTGCAAAACCGTAACATTAAGGAAAAACCCAATTATCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_639#0 --CAGGAAGTTAAACACAGTCAGGGCTTGGAGAAGAAAGAACTTGGAAAAAGACGATGGG 58 consensus_639#1 ATGAGGAAGTTAAACACAGTGAGGGCTTGGAGAAGAAAGAACT-GGAAAAAGACGATGGG 59 ***************** ********************** **************** consensus_639#0 GTGTGGACAACCAAGAGTTGGGCATTTTTGCCCCCATTTAATAGGATGTTCCAAAACCGG 118 consensus_639#1 -TGTGGACAACCAAGATGTTGGGATTTTTGCTCTCATTTAATAGAATGTTTCAAAACTGG 118 *************** * ** ******** * ********** ***** ****** ** consensus_639#0 AGGGTCCATAACTTGCCCACAATTGAACACTTTTCTGGCAAACCGTAAC-TTAAGGGAAA 177 consensus_639#1 AGGTTCTAATACTTGGCCA-AATGGAAACAATTCTTGCAAAACCGTAACATTAAGGAAAA 177 *** ** * ***** *** *** *** ** ** ********** ****** *** consensus_639#0 CCCCCATTGCGCGCGCAAAAACCCGGGAAAAAGAGATCACTAA 220 consensus_639#1 ACCCAATTATCTCT----------------------------- 191 *** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||