These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 752 fasta sequence [CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAAATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTTGTTGCTCAGAGGCTTATCAAAGAGCTGGAGGATAAATATAATCTACGGTTATATTCAGCTTTTGAACCGGAGTTTAGAGCTTTTGTAAAGGGAAGTTATGAAACGTCGTGTTTAGAACCAAAGTCGGAAGATGTGACCCAATTTATTGACCTTAAAAAACCAATCCCTTGGACAAATTTTAGAGGCATGTACAGAACAAGTTTACTGTCCGTTTATGAAAACTATTTTGCGGATATTGATTACAATATGCAGCTAGCAGGGATCGATATACAAGATTACAGTAATGAAGATGGTGAAGGACAGTTGGAATGTCC] [+] EMBL CD152547 [CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAAATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGT ] [+] EMBL CD152550 [CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAAATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGT ] [+] EMBL CD150115 [ TCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTTGTTGCTCAGAGGCTTATCAAAGAGCTGGAGGATAAATATAATCTACGGTTATATTCAGCTTTTGAACCGGAGTTTAGAGCTTTTGTAAAGGGAAGTTATGAAACGTCGTGTTTAGAACCAAAGTCGGAAGATGTGACCCAATTTATTGACCTTAAAAAACCAATCCCTTGGACAAATTTTAGAGGCATGTACAGAACAAGTTTACTGTCCGTTTATGAAAACTATTTTGCGGATATTGATTACAATATGCAGCTAGCAGGGATCGATATACAAGATTACAGTAATGAAGATGGTGAAGGACAGTTGGAATGTCC] consensusID : consensus_6391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence [ACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAATCACAATAAATTTGAGCTGCCTTCATATTTAGATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTT] [+] EMBL CD121406 [ACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAATCACAATAAATTTGAGCTGCCTTCATATTTAGATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6391#0 CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTC 60 consensus_6391#1 -------------------------------------------------------ACGTC 5 ***** consensus_6391#0 GAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAG 120 consensus_6391#1 GAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAG 65 ************************************************************ consensus_6391#0 TTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGG 180 consensus_6391#1 TTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGG 125 ************************************************************ consensus_6391#0 TCCATAGCATTTGGACCAAGATTTGAA--------------------------------A 208 consensus_6391#1 TCCATAGCATTTGGACCAAGATTTGAATCACAATAAATTTGAGCTGCCTTCATATTTAGA 185 *************************** * consensus_6391#0 TGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATT 268 consensus_6391#1 TGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATT 245 ************************************************************ consensus_6391#0 TTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGG 328 consensus_6391#1 TTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGG 305 ************************************************************ consensus_6391#0 ACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTAT 388 consensus_6391#1 ACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTAT 365 ************************************************************ consensus_6391#0 GCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTTGTTGCTCAGA 448 consensus_6391#1 GCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTT---------- 415 ************************************************** consensus_6391#0 GGCTTATCAAAGAGCTGGAGGATAAATATAATCTACGGTTATATTCAGCTTTTGAACCGG 508 consensus_6391#1 ------------------------------------------------------------ consensus_6391#0 AGTTTAGAGCTTTTGTAAAGGGAAGTTATGAAACGTCGTGTTTAGAACCAAAGTCGGAAG 568 consensus_6391#1 ------------------------------------------------------------ consensus_6391#0 ATGTGACCCAATTTATTGACCTTAAAAAACCAATCCCTTGGACAAATTTTAGAGGCATGT 628 consensus_6391#1 ------------------------------------------------------------ consensus_6391#0 ACAGAACAAGTTTACTGTCCGTTTATGAAAACTATTTTGCGGATATTGATTACAATATGC 688 consensus_6391#1 ------------------------------------------------------------ consensus_6391#0 AGCTAGCAGGGATCGATATACAAGATTACAGTAATGAAGATGGTGAAGGACAGTTGGAAT 748 consensus_6391#1 ------------------------------------------------------------ consensus_6391#0 GTCC 752 consensus_6391#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||