cluster # 6391

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Schistosoma mansoni
cluster # 6391 cluster # 6391 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6391#0 length = 752 sequences # 3

consensus_6391#1 length = 415 sequences # 1

consensusID : consensus_6391#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 752
fasta sequence

                              [CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAAATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTTGTTGCTCAGAGGCTTATCAAAGAGCTGGAGGATAAATATAATCTACGGTTATATTCAGCTTTTGAACCGGAGTTTAGAGCTTTTGTAAAGGGAAGTTATGAAACGTCGTGTTTAGAACCAAAGTCGGAAGATGTGACCCAATTTATTGACCTTAAAAAACCAATCCCTTGGACAAATTTTAGAGGCATGTACAGAACAAGTTTACTGTCCGTTTATGAAAACTATTTTGCGGATATTGATTACAATATGCAGCTAGCAGGGATCGATATACAAGATTACAGTAATGAAGATGGTGAAGGACAGTTGGAATGTCC]

[+] EMBL CD152547             [CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAAATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGT                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD152550             [CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAAATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGT                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD150115             [                                                                                                                                                                                                                                                                                                         TCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTTGTTGCTCAGAGGCTTATCAAAGAGCTGGAGGATAAATATAATCTACGGTTATATTCAGCTTTTGAACCGGAGTTTAGAGCTTTTGTAAAGGGAAGTTATGAAACGTCGTGTTTAGAACCAAAGTCGGAAGATGTGACCCAATTTATTGACCTTAAAAAACCAATCCCTTGGACAAATTTTAGAGGCATGTACAGAACAAGTTTACTGTCCGTTTATGAAAACTATTTTGCGGATATTGATTACAATATGCAGCTAGCAGGGATCGATATACAAGATTACAGTAATGAAGATGGTGAAGGACAGTTGGAATGTCC]




>consensus_6391#0
CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTC
GAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAG
TTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGG
TCCATAGCATTTGGACCAAGATTTGAAATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAA
CATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCA
CAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGT
GGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTG
TATGCCTACCCAAGATTTGTTGCTCAGAGGCTTATCAAAGAGCTGGAGGATAAATATAAT
CTACGGTTATATTCAGCTTTTGAACCGGAGTTTAGAGCTTTTGTAAAGGGAAGTTATGAA
ACGTCGTGTTTAGAACCAAAGTCGGAAGATGTGACCCAATTTATTGACCTTAAAAAACCA
ATCCCTTGGACAAATTTTAGAGGCATGTACAGAACAAGTTTACTGTCCGTTTATGAAAAC
TATTTTGCGGATATTGATTACAATATGCAGCTAGCAGGGATCGATATACAAGATTACAGT
AATGAAGATGGTGAAGGACAGTTGGAATGTCC

consensusID : consensus_6391#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [ACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAATCACAATAAATTTGAGCTGCCTTCATATTTAGATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTT]

[+] EMBL CD121406             [ACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGGTCCATAGCATTTGGACCAAGATTTGAATCACAATAAATTTGAGCTGCCTTCATATTTAGATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTT]




>consensus_6391#1
ACGTCGAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGA
GTAAGTTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATT
CAGGGTCCATAGCATTTGGACCAAGATTTGAATCACAATAAATTTGAGCTGCCTTCATAT
TTAGATGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCC
AGATTTTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACA
AAAGGACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGT
TTTATGCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6391#0      CTGGAACCAGAAAGTGAAGTGGATTTATCAGATGAAGTGAAAGTATTCATTAAAGACGTC 60
consensus_6391#1      -------------------------------------------------------ACGTC 5
                                                                             *****

consensus_6391#0      GAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAG 120
consensus_6391#1      GAGAAATATGACTTCATTAGACTAAGTCTTCCTGATATAAACGGAATCCATCTGAGTAAG 65
                      ************************************************************

consensus_6391#0      TTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGG 180
consensus_6391#1      TTGCTTCCTACACGTTTTGCCAAGAAGTTGGCGATGGGTCAGGTAGAAATTTATTCAGGG 125
                      ************************************************************

consensus_6391#0      TCCATAGCATTTGGACCAAGATTTGAA--------------------------------A 208
consensus_6391#1      TCCATAGCATTTGGACCAAGATTTGAATCACAATAAATTTGAGCTGCCTTCATATTTAGA 185
                      ***************************                                *

consensus_6391#0      TGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATT 268
consensus_6391#1      TGGTCAGCATCCCAGAAGTGGTTGAAAAGAAACATATTAACAGTGTTTTGAAGCCAGATT 245
                      ************************************************************

consensus_6391#0      TTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGG 328
consensus_6391#1      TTTCGACTCTACACCCATGTCATTGGATTTCACAAAAGAATTATCCTCACCCACAAAAGG 305
                      ************************************************************

consensus_6391#0      ACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTAT 388
consensus_6391#1      ACAATAAAATGGTTTTGAACGCAGAAGAAGGTGGTAAATATTCATTTTGTTCTGTTTTAT 365
                      ************************************************************

consensus_6391#0      GCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTTGTTGCTCAGA 448
consensus_6391#1      GCGATGTATACTGGCCTAATAACCAGCCTGTGTATGCCTACCCAAGATTT---------- 415
                      **************************************************          

consensus_6391#0      GGCTTATCAAAGAGCTGGAGGATAAATATAATCTACGGTTATATTCAGCTTTTGAACCGG 508
consensus_6391#1      ------------------------------------------------------------
                                                                                  

consensus_6391#0      AGTTTAGAGCTTTTGTAAAGGGAAGTTATGAAACGTCGTGTTTAGAACCAAAGTCGGAAG 568
consensus_6391#1      ------------------------------------------------------------
                                                                                  

consensus_6391#0      ATGTGACCCAATTTATTGACCTTAAAAAACCAATCCCTTGGACAAATTTTAGAGGCATGT 628
consensus_6391#1      ------------------------------------------------------------
                                                                                  

consensus_6391#0      ACAGAACAAGTTTACTGTCCGTTTATGAAAACTATTTTGCGGATATTGATTACAATATGC 688
consensus_6391#1      ------------------------------------------------------------
                                                                                  

consensus_6391#0      AGCTAGCAGGGATCGATATACAAGATTACAGTAATGAAGATGGTGAAGGACAGTTGGAAT 748
consensus_6391#1      ------------------------------------------------------------
                                                                                  

consensus_6391#0      GTCC 752
consensus_6391#1      ----