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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 615 fasta sequence
[TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGTCGGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTTCTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGTAAATAGTTTTATTCATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGTGCGTTTACTCTTTGTTGCCCTGAGTTTGTATTGTTACAAATTACCAAATAAGGCTGACTAAACATTCATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGGAAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGTATGAGCGAGAATCAATGACATGACTTTTC]
[+] EMBL CD200100 [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGTCGGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTTCTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGT ]
[+] EMBL CD200053 [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGCTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGACAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGATTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGCAG ]
[-] EMBL CD133208 [ CTCTCAGCTGATCCAAC TTCTTTTGAAGGGGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATGATTCGATGGGAAAGTCGGTATTCAGCTGACAAGTAATTCGTTCTGGGCTTGTGAACTTTTTTGGAGTGTCCTCGTAGATTTTTACAAAATAGTTTTATTCATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGTGCGTTTACTCTTTGTTGCCCTGAGTTTGTATTGTTACAAATTACCAAATAAGGCTGACTAAACATTCATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGGAAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGTATGAGCGAGAATCAATGACATGACTTTTC]
consensusID : consensus_6394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAATAGATTTTCTTTGGAGAAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAAGTAACTAAATTAGAAAAGAGATATTACGGTCAACGCTATTATGATATGATTAGAACATATTGATGAGAATCATTTAAATCGACATCATTCCATGAAGAAAGAGTTAGAATTTCCTAAGAAATGACTTAACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTACTAATGTTGAACTTAATAGAAATGATTGACTTTCTTTTTCAGCTTATAATTATGATTACCATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATATTTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCTGGAAGCACTGGACGACCGTTTTGTCCT]
[+] EMBL CD095708 [CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAATAGATTTTCTTTGGAGAAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAAGTAACTAAATTAGAAAAGAGATATTACGGTCAACGCTATTATGATATGATTAGAACATATTGATGAGAATCATTTAAATCGACATCATTCCATGAAGAAAGAGTTAGAATTTCCTAAGAAATGACTTAACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTACTAATGTTGAACTTAATAGAAATGATTGACTTTCTTTTTCAGCTTATAATTATGATTACCATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATATTTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCTGGAAGCACTGGACGACCGTTTTGTCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6394#0 TTTGATTAGTGGTA-ACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGA 59
consensus_6394#1 -CGAATCATTGATCTACATTTTTCATAGAACAATACTCTG----TATGGAAAATGCATTT 55
** * ** * **** ***** *** ** * * * * * *
consensus_6394#0 TGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAA 119
consensus_6394#1 TTTAAAT-ATTGAACATTCATATTATCATCATCATCTTCAAT---AGATTTTCTTTGGAG 111
* ** * ** ** *** * ** * * **** * ** ** ******
consensus_6394#0 AGGTCGGGAGGCT--TGATGGCCTGTGT-----TAGTCCTGGCAATGATGGTCTCTCAGC 172
consensus_6394#1 AAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAA--GTAACTAAAT 169
* * * ** * * ** * ** **** * ** ** *
consensus_6394#0 TGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAAT 232
consensus_6394#1 TAGAAAAGAGATATTACGGTCAACGCTATT-ATGATATGATTAGAACATATTGATGAGAA 228
* * * ** * * * * *** * ** * *** * *
consensus_6394#0 GAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTT 292
consensus_6394#1 TCATTTAAATCGAC-ATCATTCCATGAAGAAAGAGTTAGA-ATTTCCTAAGAAATGACTT 286
*** * *** ** **** *** ** * *** * * *** *** **
consensus_6394#0 CTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGTAAATAGTTTTATT--- 349
consensus_6394#1 ---AACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTA 343
* * *** ** **** * *** * *** *** *** ** * * *
consensus_6394#0 -CATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGT-GCGTTTAC 407
consensus_6394#1 CTAATGTTGAACTTAATAGAAATG-ATTGACTTTCTTTTTCAGCTTATAATTATGATTAC 402
* **** ** * * * * * ***** *** ** * * * ****
consensus_6394#0 TCTTTGTTGCCCTGAGTTTGT-ATTGTTACAAATTACCAAATAAGGCTGACTAAACATTC 466
consensus_6394#1 -CATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATAT 461
* ** * ****** *** ** * * ** * * **
consensus_6394#0 ATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGG 526
consensus_6394#1 TTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCT 521
* ** *** ** * * * *** * * * * * * **
consensus_6394#0 AAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGT 586
consensus_6394#1 GGAAGCACTGGA--CGACCGTTTTGTCCT------------------------------- 548
** *** *** *
consensus_6394#0 ATGAGCGAGAATCAATGACATGACTTTTC 615
consensus_6394#1 -----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||