cluster # 6398

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Schistosoma mansoni
cluster # 6398 cluster # 6398 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6398#0 length = 518 sequences # 1

consensus_6398#1 length = 450 sequences # 2
consensus_6398#2 length = 324 sequences # 1

consensusID : consensus_6398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [GGTTGTATTTATGGCACATTTTAATTCATAAACCCCAATCTGTACTTATTAGGTTCTTTAAATCTATGAAATTCGCTTTCAAGAGGAATCGGAATGCCACATTGATGAGATGGGTTCCTAACACACCAGTGTAACTTCTGATATCAACTCTCTCAGGTTTGTTACGTCTTAGTTTTTGGCGGACTCATTGTACGAATTACTTTATTAAGCGTGCACTTGTACGTATGTATGCTTATTTTCGTCTGCATGCCCGTTGTAGGACAATACAGTAGATCTTATACTCCAAAATCACTACATAAAAACGGTTTTTTGTGCGCGATTTCCACCATCTATACACAAAGTTCTTATTGGAAATCACATAATCTTTAGAGAGGGGATAAATTCCAAAATTCAAATTCGTCACTGGGTTTCGAAAACTAAAAGACTGATATAATAAGTGGTTTGTACAATAATGAGCTCTAAATCCAAAATAATGCAATATCCTTGATTTCCAGGTGCTTTTTTAAAATCTCGTTTTT]

[+] EMBL BF936654             [GGTTGTATTTATGGCACATTTTAATTCATAAACCCCAATCTGTACTTATTAGGTTCTTTAAATCTATGAAATTCGCTTTCAAGAGGAATCGGAATGCCACATTGATGAGATGGGTTCCTAACACACCAGTGTAACTTCTGATATCAACTCTCTCAGGTTTGTTACGTCTTAGTTTTTGGCGGACTCATTGTACGAATTACTTTATTAAGCGTGCACTTGTACGTATGTATGCTTATTTTCGTCTGCATGCCCGTTGTAGGACAATACAGTAGATCTTATACTCCAAAATCACTACATAAAAACGGTTTTTTGTGCGCGATTTCCACCATCTATACACAAAGTTCTTATTGGAAATCACATAATCTTTAGAGAGGGGATAAATTCCAAAATTCAAATTCGTCACTGGGTTTCGAAAACTAAAAGACTGATATAATAAGTGGTTTGTACAATAATGAGCTCTAAATCCAAAATAATGCAATATCCTTGATTTCCAGGTGCTTTTTTAAAATCTCGTTTTT]




>consensus_6398#0
GGTTGTATTTATGGCACATTTTAATTCATAAACCCCAATCTGTACTTATTAGGTTCTTTA
AATCTATGAAATTCGCTTTCAAGAGGAATCGGAATGCCACATTGATGAGATGGGTTCCTA
ACACACCAGTGTAACTTCTGATATCAACTCTCTCAGGTTTGTTACGTCTTAGTTTTTGGC
GGACTCATTGTACGAATTACTTTATTAAGCGTGCACTTGTACGTATGTATGCTTATTTTC
GTCTGCATGCCCGTTGTAGGACAATACAGTAGATCTTATACTCCAAAATCACTACATAAA
AACGGTTTTTTGTGCGCGATTTCCACCATCTATACACAAAGTTCTTATTGGAAATCACAT
AATCTTTAGAGAGGGGATAAATTCCAAAATTCAAATTCGTCACTGGGTTTCGAAAACTAA
AAGACTGATATAATAAGTGGTTTGTACAATAATGAGCTCTAAATCCAAAATAATGCAATA
TCCTTGATTTCCAGGTGCTTTTTTAAAATCTCGTTTTT

consensusID : consensus_6398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 450
fasta sequence

                              [GGAGACTCGGAGATGGCGGCTAACTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTATGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCATGGAGTGACGGCAACGAGTAGGAGGGTC]

[+] EMBL BG932144             [GGAGACTCGGAGATGGCGGCTAACTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTATGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGC                                    ]
[+] EMBL CD088860             [                                                                                                                                                                                                                                                                                                                                                                      GTCTAGGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCATGGAGTGACGGCAACGAGTAGGAGGGTC]




>consensus_6398#1
GGAGACTCGGAGATGGCGGCTAACTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGA
GTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTG
GGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGG
TGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGT
GTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGAC
CTATACCGGACCGTTGCTGTAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGT
CTATGCATGGAGTGACGGCAACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGG
CATGGAGTGACGGCAACGAGTAGGAGGGTC

consensusID : consensus_6398#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TATGGATTGTGATGGACGGGGGCTCCTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTTACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTTGAGCGTTGGACCTATACCGGACCGTTGTTGTTA]

[+] EMBL BG930438             [TATGGATTGTGATGGACGGGGGCTCCTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTGGAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTTACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTTGAGCGTTGGACCTATACCGGACCGTTGTTGTTA]




>consensus_6398#2
TATGGATTGTGATGGACGGGGGCTCCTTTAAATGGGTGAGAAGCTTAACTCGCTTGATTG
GAGTTTTGCATTGAATGTGAGTGCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGCTG
TGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAA
GGTGTTGGTTGGTCTAAACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGT
GTGTAACAACTTACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTTGAGCGTTGG
ACCTATACCGGACCGTTGTTGTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6398#1      -----------------------------GGAGACTCGGAGATGGCGGCTAA---CTTTA 28
consensus_6398#2      --------------------------TATGGATTGTGATGGACGGGGGCTC----CTTTA 30
consensus_6398#0      GGTTGTATTTATGGCACATTTTAATTCATAAACCCCAATCTGTACTTATTAGGTTCTTTA 60
                                                     *                 *     *****

consensus_6398#1      AATGGGTGAGAAGC-TTAACTCGCTTGATTGGAGTTTTGCATTGA--ATGTGAGTGCCAA 85
consensus_6398#2      AATGGGTGAGAAGC-TTAACTCGCTTGATTGGAGTTTTGCATTGA--ATGTGAGTGCCAA 87
consensus_6398#0      AATCTATGAAATTCGCTTTCAAGAGGAATCGGAATGCCACATTGATGAGATGGGTTCCTA 120
                      ***   *** *  *  *  *  *    ** *** *    ******  *  ** ** ** *

consensus_6398#1      GTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGG 145
consensus_6398#2      GTGGGCCATTTTTGGTAAGCAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGG 147
consensus_6398#0      ACACACCAGTGTAACTTC-TGATATCAACTCTCTCAGGTTTGTTACGTCTTAGTTTTTGG 179
                           *** * *   *       *    * ** *  * *     *    ** * **  **

consensus_6398#1      TGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGAC 205
consensus_6398#2      TGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAAACAGCAGGAC 207
consensus_6398#0      CG---GACTCATTGT--ACGAATTACTTTATTAAGCGTGCACTTGTACGTAT-GTATGCT 233
                       *    ** *   *   * **  ***   *  * * **    * **    *  * * *  

consensus_6398#1      GGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAAC 265
consensus_6398#2      GGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTTACCTGCCGAATCAAC 267
consensus_6398#0      TATTTTCGTCTGCAT-GCCCGTTGTAGGACAATACAGTAGATCTTATACTCCAAAATCAC 292
                        *   * *     * *   *  *      * *     * * ** *    ** **   **

consensus_6398#1      CAGCCCTGAAAATGGATGGC-GCTCGAGCGTTGGACC-----TATACCGGACCGTTGCTG 319
consensus_6398#2      CAGCCCTGAAAATGGATGGC-GCTTGAGCGTTGGACC-----TATACCGGACCGTTGTTG 321
consensus_6398#0      TA--CATAAAAACGGTTTTTTGTGCGCGATTTCCACCATCTATACACAAAGTTCTTATTG 350
                       *  * * **** ** *    *   * *  **  ***     ** **       **  **

consensus_6398#1      TAAGCTAGGCCTATGCTGTGTGAGGGCAAGCTGCACTTGGTCTATGCATGGAGTGACGGC 379
consensus_6398#2      TTA--------------------------------------------------------- 324
consensus_6398#0      GAAATCACATAATCTTTAGAGAGGGGATAAATTCCAAAATTCAAATTCGTCACTGGGTTT 410
                        *                                                         

consensus_6398#1      AACGAGTAGGAGGGTCGCTGTGGCTAGCGGGAAGCCTCAGGCATGGAGTGACGGCAACGA 439
consensus_6398#2      ------------------------------------------------------------
consensus_6398#0      CGAAAACTAAAAGACTGATATAATAAGTGGTTTGTACAATAATGAGCTCTAAATCCAAAA 470
                                                                                  

consensus_6398#1      GTAGGAGGGTC------------------------------------- 450
consensus_6398#2      ------------------------------------------------
consensus_6398#0      TAATGCAATATCCTTGATTTCCAGGTGCTTTTTTAAAATCTCGTTTTT 518