cluster # 6399

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Schistosoma mansoni
cluster # 6399 cluster # 6399 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6399#0 length = 358 sequences # 3

consensus_6399#1 length = 224 sequences # 1

consensusID : consensus_6399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 358
fasta sequence

                              [CGGTCGCGCGTTTTATCAAGGATGGCTAAAAGGACGAAGAAAGTTGGCATAGTTGGAAAGTATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAATATAGTTGGTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CD194050             [CGGTCGCGCGTTTTATCAAGGATGGCTAAAAGGACGAAGAAAGTTGGCATAGTTGGAAAGTATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGC                                                                                                                                                                                      ]
[+] EMBL AF025539             [                                 ACGAAGAAAGTTGGCATAGTTGGAAAGTATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAATATAGTTGGTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL SMAA85210            [                                                                                                 TCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAATATAGTTGGTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6399#0
CGGTCGCGCGTTTTATCAAGGATGGCTAAAAGGACGAAGAAAGTTGGCATAGTTGGAAAG
TATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAG
CATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGC
ATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACA
ACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAA
ACTATGTTTTAAAAAAATATAGTTGGTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [CGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCCGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAAATATAGTTGGTCTGCTACCTAAATATATTTTTGACTTAAAGCCGCTAAAAAAAAAAAAAAAAAA]

[-] EMBL AI395714             [CGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCCGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAAATATAGTTGGTCTGCTACCTAAATATATTTTTGACTTAAAGCCGCTAAAAAAAAAAAAAAAAAA]




>consensus_6399#1
CGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTG
GTGGCGCTTATGTTTGCAGTACAACGGCCGCGACAACAATTCGGGCTGCTATCAGGCGCT
TGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAAATATAGTTGGTCTGCTACCT
AAATATATTTTTGACTTAAAGCCGCTAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6399#0      CGGTCGCGCGTTTTATCAAGGATGGCTAAAAGGACGAAGAAAGTTGGCATAGTTGGAAAG 60
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      TATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAG 120
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      CATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGC 180
consensus_6399#1      -------------------------------------CGTTGAAAAGAAAAGCAGCTGGC 23
                                                           ***********************

consensus_6399#0      ATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACA 240
consensus_6399#1      ATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACA 83
                      ************************************************************

consensus_6399#0      ACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAA 300
consensus_6399#1      ACGGCCGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAA 143
                      ***** ******************************************************

consensus_6399#0      ACTATGTTTTAAAAAAA-TATAGTTGGTCTGCTA---AAAAAAA---------------- 340
consensus_6399#1      ACTATGTTTTAAAAAAAATATAGTTGGTCTGCTACCTAAATATATTTTTGACTTAAAGCC 203
                      ***************** ****************   *** * *                

consensus_6399#0      ---AAAAAAAAAAAAAAAAAA 358
consensus_6399#1      GCTAAAAAAAAAAAAAAAAAA 224
                         ******************