cluster # 640

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Schistosoma mansoni
cluster # 640 cluster # 640 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_640#0 length = 664 sequences # 1

consensus_640#1 length = 232 sequences # 1

consensusID : consensus_640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [AACATATATTTACATATGTAGAATGAAAAGAGAAAATAAAAGGTGGTTTTAAAAAACAATTCGATCGAAGTGTTTGGCTCATGTAATTACTAGATCTTTACAGAGAGGTTCATTCTTCAACTTGCCTCAGACTTTTCTTGCCTTCGCCATATAATTACTGAGCCCTTCTCATCTGCCGACGCTAACATATTCTCGTCCCAACTGATAGCTACATCTAGCACTGGAGCCGTATGTCCCTGTAAAATGGTGACAACACCCGTAGATGTTTGTTTATTGGGAGAAGAACTGTTTCTTGTCTCGGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAGCCCGATACCAGCTGCATTGATCAACAAATATGTCTCACTTTTTTCTTTGGATAGCCATGAATATATAGAAAGACTAGTTATGCTTGGCGTTAACGATGTACCTTCACTACTACGTAACTTAACTATCCCACTATTCGTACGTG]

[+] EMBL CD074877             [AACATATATTTACATATGTAGAATGAAAAGAGAAAATAAAAGGTGGTTTTAAAAAACAATTCGATCGAAGTGTTTGGCTCATGTAATTACTAGATCTTTACAGAGAGGTTCATTCTTCAACTTGCCTCAGACTTTTCTTGCCTTCGCCATATAATTACTGAGCCCTTCTCATCTGCCGACGCTAACATATTCTCGTCCCAACTGATAGCTACATCTAGCACTGGAGCCGTATGTCCCTGTAAAATGGTGACAACACCCGTAGATGTTTGTTTATTGGGAGAAGAACTGTTTCTTGTCTCGGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAGCCCGATACCAGCTGCATTGATCAACAAATATGTCTCACTTTTTTCTTTGGATAGCCATGAATATATAGAAAGACTAGTTATGCTTGGCGTTAACGATGTACCTTCACTACTACGTAACTTAACTATCCCACTATTCGTACGTG]




>consensus_640#0
AACATATATTTACATATGTAGAATGAAAAGAGAAAATAAAAGGTGGTTTTAAAAAACAAT
TCGATCGAAGTGTTTGGCTCATGTAATTACTAGATCTTTACAGAGAGGTTCATTCTTCAA
CTTGCCTCAGACTTTTCTTGCCTTCGCCATATAATTACTGAGCCCTTCTCATCTGCCGAC
GCTAACATATTCTCGTCCCAACTGATAGCTACATCTAGCACTGGAGCCGTATGTCCCTGT
AAAATGGTGACAACACCCGTAGATGTTTGTTTATTGGGAGAAGAACTGTTTCTTGTCTCG
GCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCA
CTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGA
CGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGA
ATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAGCCCGATACCAGCTGCATTG
ATCAACAAATATGTCTCACTTTTTTCTTTGGATAGCCATGAATATATAGAAAGACTAGTT
ATGCTTGGCGTTAACGATGTACCTTCACTACTACGTAACTTAACTATCCCACTATTCGTA
CGTG

consensusID : consensus_640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence

                              [TCAGGCCAAGAGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAG]

[-] EMBL CD193660             [TCAGGCCAAGAGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAG]




>consensus_640#1
TCAGGCCAAGAGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAAT
CTTCACTTCCACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACG
AATGAATAAGACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACC
TTTGCTCCAGAATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_640#0      AACATATATTTACATATGTAGAATGAAAAGAGAAAATAAAAGGTGGTTTTAAAAAACAAT 60
consensus_640#1      ------------------------------------------------------------
                                                                                 

consensus_640#0      TCGATCGAAGTGTTTGGCTCATGTAATTACTAGATCTTTACAGAGAGGTTCATTCTTCAA 120
consensus_640#1      ------------------------------------------------------------
                                                                                 

consensus_640#0      CTTGCCTCAGACTTTTCTTGCCTTCGCCATATAATTACTGAGCCCTTCTCATCTGCCGAC 180
consensus_640#1      ------------------------------------------------------------
                                                                                 

consensus_640#0      GCTAACATATTCTCGTCCCAACTGATAGCTACATCTAGCACTGGAGCCGTATGTCCCTGT 240
consensus_640#1      ------------------------------------------------------------
                                                                                 

consensus_640#0      AAAATGGTGACAACACCCGTAGATGTTTGTTTATTGGGAGAAGAACTGTTTCTTGTCTCG 300
consensus_640#1      --------------------------------------------------TCAGGCCAAG 10
                                                                       **  * *  *

consensus_640#0      -GCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCC 359
consensus_640#1      AGCGTCTGCATTACGACTTCTCAACACATTATATAGGTATACATTGCAATCTTCACTTCC 70
                      ***********************************************************

consensus_640#0      ACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAG 419
consensus_640#1      ACTAGCAGCACAAGCTCCAGAACGGAATGATATGAGTGGTGCAAAACACGAATGAATAAG 130
                     ************************************************************

consensus_640#0      ACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAG 479
consensus_640#1      ACGAAGTGTTGTTGGGACGGAATTGAAAGGACGATGGTGCACAGGAAACCTTTGCTCCAG 190
                     ************************************************************

consensus_640#0      AATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAGCCCGATACCAGCTGCATT 539
consensus_640#1      AATTACGCTCCTATTATGTAATGTTAGTCGAAGCAACAATAG------------------ 232
                     ******************************************                  

consensus_640#0      GATCAACAAATATGTCTCACTTTTTTCTTTGGATAGCCATGAATATATAGAAAGACTAGT 599
consensus_640#1      ------------------------------------------------------------
                                                                                 

consensus_640#0      TATGCTTGGCGTTAACGATGTACCTTCACTACTACGTAACTTAACTATCCCACTATTCGT 659
consensus_640#1      ------------------------------------------------------------
                                                                                 

consensus_640#0      ACGTG 664
consensus_640#1      -----