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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence
[GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGTCTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATTAAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAACTACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCAGGACCCTAAAAAAAATC-AGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTAACAGCGCAGTGCAATAGAATTCCCA]
[+] EMBL CD181443 [GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGTCTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATTAAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAACTACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCAGGACCCTAAAAAAAATC AGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGTTCCACAGTGACT ]
[-] EMBL CD191203 [ TTACTACTGGATGAATTGATAAACAACCATTATACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGA CCTAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTAACAGCGCAGTGCAATAGAATTCCCA]
consensusID : consensus_6408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence
[GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGG-TTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTGGAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATACTCATCTAGTAACG]
[-] EMBL CD134231 [GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGG TTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTGGAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATACTCATCTAGTAACG]
[-] EMBL CD134328 [ AAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTTTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6408#0 GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGT 60
consensus_6408#1 ------------------------------------------------------------
consensus_6408#0 CTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATT 120
consensus_6408#1 ------------------------------------------------------------
consensus_6408#0 AAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAAC 180
consensus_6408#1 ------------------------------------------------------------
consensus_6408#0 TACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCG 240
consensus_6408#1 --GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCG 58
** * * ******************************************
consensus_6408#0 AAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACA 300
consensus_6408#1 AAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAA------------------------ 94
************************************
consensus_6408#0 CTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCA 360
consensus_6408#1 ------ATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCA 148
********************* ***** ******* ********** *****
consensus_6408#0 GGACCCTAAAAAAAATCA-GAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGT 419
consensus_6408#1 GGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTT 208
***** *********** *************************************** *
consensus_6408#0 TCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAG 479
consensus_6408#1 TCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAG 268
************************************************************
consensus_6408#0 ACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCAT 539
consensus_6408#1 ACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCAT 328
********* **************************************************
consensus_6408#0 CTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAA 599
consensus_6408#1 CTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAA 388
************************************************************
consensus_6408#0 ACATATCCGTTACTCCTAGTAACAGCGCAGTG----CAATAGAATTCCCA---------- 645
consensus_6408#1 ACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTG 448
******************** * * * ** * ** * *
consensus_6408#0 ------------------------------------------------------------
consensus_6408#1 GAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATA 508
consensus_6408#0 --------------
consensus_6408#1 CTCATCTAGTAACG 522
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||