cluster # 6409

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Schistosoma mansoni
cluster # 6409 cluster # 6409 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6409#0 length = 343 sequences # 2

consensus_6409#1 length = 340 sequences # 2

consensusID : consensus_6409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 343
fasta sequence

                              [CAACGAGACCAAATGGGCAAGGCTCCATCCTTACAGAGGGATCTAAGCAAGAAAGCCTTTAGTGCAAAAAATTATAGAATTAAGGAAATCATGGGAGATGCCACAAAAATTCCT-CTTCAGTGTCATACCTAACAGCAAACACTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCACCACACACCACACTGTGGGAGTGCTTAGGAAATGGAAAAATGCTTACCTTNCNCGGTCTAGTGCTGCTCGTTGGTTTCCAAATCTGATTTTTAGGATACACATGTGTACATNTGTACTGTGTGTGTGTGT]

[+] EMBL CD164608             [CAACGAGACCAAATGGGCAAGGCTCCATCCTTACAGAGGGATCTAAGCAAGAAAGCCTTTAGTGCAAAAAATTATAGAATTAAGGAAATCATGGGAGATGCCACAAAAATTCCT CTTCAGTGTCATACCTAACAGCAAACACTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCACCACACACCACACTGTGGGAGTGCTTAGGAAATGGAAAAATGCTTACC                                                                                  ]
[+] EMBL CD164536             [                  AAGGCTCCAGCCTTACAGAGGGATCTAAGCAAGAAAGCCTTTAGTGCAAAAAATTATATATTTAAGGAAATCATGAGAGATGCCACAAAAATTCCTGCTTCAGTGTCTTACCTATCAGCNNACACTGGACACATGACGCGATTTTCCTGGGGATTTGCTNGATAAATAACATATGCATGTGATGGACTACCAGTCNTTACAAACCACACTGTGGGAGTGCTTAGGAAATGGAAAAATGTTCTCCTTNCNCGGTCTAGTGCTGCTCGTTGGTTTCCAAATCTGATTTTTAGGATACACATGTGTACATNTGTACTGTGTGTGTGTGT]




>consensus_6409#0
CAACGAGACCAAATGGGCAAGGCTCCATCCTTACAGAGGGATCTAAGCAAGAAAGCCTTT
AGTGCAAAAAATTATAGAATTAAGGAAATCATGGGAGATGCCACAAAAATTCCTCTTCAG
TGTCATACCTAACAGCAAACACTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGAT
AAATAACATATGCATGTGATGGACTACCAATCACCACACACCACACTGTGGGAGTGCTTA
GGAAATGGAAAAATGCTTACCTTNCNCGGTCTAGTGCTGCTCGTTGGTTTCCAAATCTGA
TTTTTAGGATACACATGTGTACATNTGTACTGTGTGTGTGTGT

consensusID : consensus_6409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 340
fasta sequence

                              [GCAAGGGCTCCAGCTCTTACAGAGTGGATCTAAGCAAGAAAAGCTCTTTAGTGGGCAAAAAATTATTAGAATTAAGGGGAAATCATGAGAGATGCCACANAAAATTCCTCTTCAGTGTCATACCCTAACAGCAAACACGTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTGTGGGAGTGCTTAAGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGTATCCAAATCTGATTTTAAAAATACACATGTGTACATATGTAGTGTGTGTGTGTGT]

[+] EMBL CD164581             [GCAAGGGCTCCAGCTCTTACAGAGTGGATCTAAGCAAGAAAAGCTCTTTAGTGGGCAAAAAATTATTAGAATTAAGGGGAAATCATGAGAGATGCCACANAAAATTCCTCTTCAGTGTCATACCCTAACAGCAAACACGTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTGTGGGAGTGCTTAAGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGTATCCAAATCTGATTTTAAAAATACACATGTGTACATATGTAGTGTGTGTGTGT  ]
[+] EMBL CD164577             [                                     agAAAGC CTCTACT  GCAAAAAATTA TAGAATTAA  AGAAATCATGAGAGATGCCACA AAAATTCCTCTTGAGTGTCATA CCTAACAGCAAACAC TGGACACATGACGCGATTTTCCTGGGGACTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTGTGGGAGTGCTTATGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGTATCCAAATCTGATTATAAAAATACACATGTGTACATATGTACTGTGTGTGTATGT]




>consensus_6409#1
GCAAGGGCTCCAGCTCTTACAGAGTGGATCTAAGCAAGAAAAGCTCTTTAGTGGGCAAAA
AATTATTAGAATTAAGGGGAAATCATGAGAGATGCCACANAAAATTCCTCTTCAGTGTCA
TACCCTAACAGCAAACACGTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAA
TAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTGTGGGAGTGCTTAAGA
AATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGTATCCAAATCTGATTT
TAAAAATACACATGTGTACATATGTAGTGTGTGTGTGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6409#0      CAACGAGACCAAATGGGCAAGGCTCCATC-CTTACAGAG-GGATCTAAGCAAGAAAG--C 56
consensus_6409#1      ---------------GCAAGGGCTCCAGCTCTTACAGAGTGGATCTAAGCAAGAAAAGCT 45
                                     *  * ******* * ********* ****************    

consensus_6409#0      CTTTAGTG--CAAAAAATTAT-AGAATTAAGG--AAATCATGGGAGATGCCACAAAAA-T 110
consensus_6409#1      CTTTAGTGGGCAAAAAATTATTAGAATTAAGGGGAAATCATGAGAGATGCCACANAAAAT 105
                      ********  *********** **********  ******** *********** *** *

consensus_6409#0      TCCTCTTCAGTGTCATACC-TAACAGCAAACAC-TGGACACATGACGCGATTTTCCTGGG 168
consensus_6409#1      TCCTCTTCAGTGTCATACCCTAACAGCAAACACGTGGACACATGACGCGATTTTCCTGGG 165
                      ******************* ************* **************************

consensus_6409#0      GATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCACCACACACCACACTG 228
consensus_6409#1      GATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTG 225
                      *********************************************  *** *********

consensus_6409#0      TGGGAGTGCTTAGGAAATGGAAAAATGCTTACCTTNCNCGGTCTAGTGCTGCTCGTTGGT 288
consensus_6409#1      TGGGAGTGCTTAAGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGT 285
                      ************ ************** ***  *      ** ** **   * **** **

consensus_6409#0      TTCCAAATCTGATTTTTAGGATACACATGTGTACATNTGTACTGTGTGTGTGTGT 343
consensus_6409#1      ATCCAAATCTGATTTTAAAAATACACATGTGTACATATGTAGTGTGTGTGTGTGT 340
                       *************** *  **************** **** *************