cluster # 6412

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Schistosoma mansoni
cluster # 6412 cluster # 6412 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6412#0 length = 350 sequences # 2

consensus_6412#1 length = 341 sequences # 2

consensusID : consensus_6412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 350
fasta sequence

                              [CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTCACTTCGAAGTTAGTTGACAGTTGTTCTGAGTTCCATTTGTTCTTCAATTGTAGAAATGCTGCTCTCGCTTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTTATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGTTTATATTGAGACCTACTGCTACTGAGGCTACTGTTACACTGGTCGTCTTCTTCTGCANTTGTCGNT]

[+] EMBL CD199226             [CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTCACTTCGAAGTTAGTTGACAGTTGTTCTGAGTTCCATTTGTTCTTCAATTGTAGAAATGCTGCTCTCGCTTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTTATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGTTTATATTGAGACCTACTGCTACTGAGGCTACTGTTACACTGGTCGTCTTCTTCTGCANTTGTCGNT]
[+] EMBL CD199227             [CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTCACTTCGAAGTTAGTTGACAGTTGTTCTGAGTTCCATTTGTTCTTCAATTGTAGAAATGCTGCTCTCGCTTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTTATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGNTTATATTGAGACCTACTGCTACTGAGGCTAC                                   ]




>consensus_6412#0
CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTCACTTC
GAAGTTAGTTGACAGTTGTTCTGAGTTCCATTTGTTCTTCAATTGTAGAAATGCTGCTCT
CGCTTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTTATCAATGATGCT
TCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAGTGTAATTCGATT
GGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGTTTATATTGAGACCTAC
TGCTACTGAGGCTACTGTTACACTGGTCGTCTTCTTCTGCANTTGTCGNT

consensusID : consensus_6412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 341
fasta sequence

                              [GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCGTTGTTTATATTGAGACCTATTGCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGATAGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTCATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATACTGAGACCTATTGCTGCTGAGATACTGCACACTATCGAGG]

[-] EMBL CD061323             [GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCGTTGTTTATATTGAGACCTATTGCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGATAGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTCATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATACTGAGACCTATTGCTGCTGAGATACTGCACACTATCGAGG]
[-] EMBL CD061318             [GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATATTGAGACCTATTGCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGATAGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTCATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATATTGAGACCTATTGCT                         ]




>consensus_6412#1
GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCGTTGTTTATATTGAGACCTATT
GCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGAT
AGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTC
ATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAG
TGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTAT
ACTGAGACCTATTGCTGCTGAGATACTGCACACTATCGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6412#0      -----CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTC 55
consensus_6412#1      GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCGTTGTTTATATTGAGACCTATT 60
                               ** *   *** *   *    *  * ** **  ***  ******    * * 

consensus_6412#0      ACTTC-GAAGTTAGT----TGACAGTTGTTCTGAGTTCCATTTGTTCTTCAAT-TGTAGA 109
consensus_6412#1      GCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGAT 120
                       ** * ** * ** *        *** **  *    * ******** **   * ***   

consensus_6412#0      AATGCTGCTCTCGC-TTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTT 168
consensus_6412#1      AGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTC 180
                      *     **     * * *** **  **        ** *** *** ***** ** **** 

consensus_6412#0      ATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAG 228
consensus_6412#1      ATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAG 240
                      ************ ***** ** ** *** *** *   ** * ** ***************

consensus_6412#0      TGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGTTTAT 288
consensus_6412#1      TGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTAT 300
                      *******************   ********** **** **********************

consensus_6412#0      ATTGAGACCTACTGCTACTGAGGCTACTGTTACACTGGTCGTCTTCTTCTGCANTTGTCG 348
consensus_6412#1      ACTGAGACCTATTGCTGCTGAGA-TACTGC-ACACTA-TCGAGG---------------- 341
                      * ********* **** *****  *****  *****  ***                   

consensus_6412#0      NT 350
consensus_6412#1      --