These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 539 fasta sequence [GCCCGGTACCCTGGCTTTGGTGGAAATCACGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAAAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGACTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAACTTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTTAATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTTTGCATTGAACATATATCTATGTTCACTTGATCGGTTAG] [+] EMBL CD168031 [GCCCGGTACCCTGGCTTTGGTGGAAATCACGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAAAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGACTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAACTTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTTAATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTTTGCATTGAACATATATCTATGTTCACTTGATCGGTTAG] [+] EMBL CD168096 [ AATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGACTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAACTTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTTAATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTTTGCATTGAACATATATCTATGTTCACTTGATCGGTTA ] consensusID : consensus_6413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 490 fasta sequence [GGAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTAAGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAAAGCAGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCATTAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGCGGAAAAGAGGAAGACCAAAGAGTACATCACGACGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCA-CCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCAT] [+] EMBL CD164704 [GGAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTAAGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAAAGCAGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCATTAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGCGGAAAAGAGGAAGACCAAAGAGTACATCACGACGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCA CCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCA ] [-] EMBL CD164647 [ GAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTAAGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAAAGCGGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCATTAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGCGGAAAAGAGGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTGCAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTTCCTGGCCACCCACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGATTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGATGTAGAGTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6413#0 ------------------------------------------------------------ consensus_6413#1 GGAGAACTACTACAACAATCATCAAGAAGGTATAAATGTCTATAAACAATTGTCTACGTA 60 consensus_6413#0 ------------------------------------------------------------ consensus_6413#1 AGATACTCAATATCCGTTGGCCGGATACCATGAGCAACAATTTATTATGGGAGAGGACAA 120 consensus_6413#0 ------------------------------------------------------------ consensus_6413#1 AGCAGCTTTGAGCTGAAGAGGAAATTCGGAAAAGACATTGGAAGTGGATCGGAAATGCAT 180 consensus_6413#0 --------------------------------------GCCCGGTACCCTGGCTTTG-GT 21 consensus_6413#1 TAAGGAAATCATCAAATTGCATCACGAGGCAAGCCCTAGCTTGAACTCCTGAAGGGAAGC 240 ** * **** * consensus_6413#0 GGAAATCACGAAGACCAAAGAATACATCACGCCGGGAAATAGAAGATCTAAAAAGGACTG 81 consensus_6413#1 GGAAAAGAGGAAGACCAAAGAGTACATCACGACGGGAAATAGAAGATCTAAAAAGGACTG 300 ***** * ************ ********* **************************** consensus_6413#0 CAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTT 141 consensus_6413#1 CAAAGGACAGAGTTAGATGGAGAGTACTTACAATAAGTATCAAGGCTACCGTCACTTTTT 360 ************************************************************ consensus_6413#0 CCTGGCCACCCACACCGTAAAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGA 201 consensus_6413#1 CCTGGCCACC-ACACCGTAGAAAGCGTGAGTAGAGTGCTGATGAAGTTATGAACCTCAGA 419 ********** ******** **************************************** consensus_6413#0 TTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGA 261 consensus_6413#1 TTAAGGCGATTGTTCGTCGCTACTTTAGGTAGGATTCGGTTTTATTGGTAGAACTGTTGA 479 ************************************************************ consensus_6413#0 TGTAGAGTCATAAGCGTATACTCCGTCGATAAAGTAATAGAAACATAAAAGTAGGGATGA 321 consensus_6413#1 TGTAGAGTCAT------------------------------------------------- 490 *********** consensus_6413#0 CTTAGGAAGTCGATAATTGTAGACGTACAACCTGTGTTTTCTAAATTCCGAATCTATAAC 381 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 TTGTGAATTATTTAATTTCGCGAACTGCCAAGTTTACTGTTTCATCGTACTACTTTTGTT 441 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 AATTTCTTCTATATATGCTGTTATAAAGTACGGTAACTTAAACACTTCCGAATGTGGTTT 501 consensus_6413#1 ------------------------------------------------------------ consensus_6413#0 TGCATTGAACATATATCTATGTTCACTTGATCGGTTAG 539 consensus_6413#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||