cluster # 6414

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Schistosoma mansoni
cluster # 6414 cluster # 6414 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6414#0 length = 574 sequences # 3

consensus_6414#1 length = 368 sequences # 1

consensusID : consensus_6414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 574
fasta sequence

                              [ACCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCCTCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAAGTAGGATTGTTGAATACACTATCAAAACCAGCACGCAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAG-TTTCCCAATGAGCGGTATCGAATTTGACAGAACT]

[+] EMBL CD201032             [ACCTTTAGAGTTGAGAAGTTTACGTAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCCTCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCACTATTCGACAAAGTAGGATTGCTGAATACACTATCAAAACCAGCACGCAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAG TTTCCCAATGAGCGGTATCGAATTTGACAGAACT]
[+] EMBL CD201018             [ACCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCCTCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAAGTAGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACANAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAGTTTTCCCA                           ]
[-] EMBL CD200822             [ CCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACTAAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCAATAAGCAATTCATGTAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTCATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACAGCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAAAAGCCCTCTGGATGCAGTAAAGATTTGCATATATACAGTGGAATAAAGCTCATTATTTGACAAAGTAGGAGTGTTGta                                                                                                                                                                                                           ]




>consensus_6414#0
ACCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACT
AAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATG
TAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTC
ATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACA
GCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCC
TCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAAGT
AGGATTGTTGAATACACTATCAAAACCAGCACGCAGTGAGTTATATGATCCTAAACAGTC
CTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTC
AAGTCTACAAAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAG
TTTCCCAATGAGCGGTATCGAATTTGACAGAACT

consensusID : consensus_6414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [ATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAGGTAGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATGAGTGAGTTTCGAATCGCCAAACACTAGTTTCCCAATGAGCGGTATCGAATTCTGTGGAGAAATCAAAATAAGCTTGTACTTACTGACAGAACTTTTTGATCATCTAACTTTGTAGATAATATACCCCGGAAAAAACTATCTAGCAATTCTTTAATACATTGTGACTGTGAT]

[+] EMBL CD093153             [ATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAGGTAGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAGTATAGTGCCTCATTATGAGTGAGTTTCGAATCGCCAAACACTAGTTTCCCAATGAGCGGTATCGAATTCTGTGGAGAAATCAAAATAAGCTTGTACTTACTGACAGAACTTTTTGATCATCTAACTTTGTAGATAATATACCCCGGAAAAAACTATCTAGCAATTCTTTAATACATTGTGACTGTGAT]




>consensus_6414#1
ATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAGGTAGGATTGTTGAATACA
CTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTCCTCTTTTCGTGAAAAT
AAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTCAAGTCTACAAAACAAG
TATAGTGCCTCATTATGAGTGAGTTTCGAATCGCCAAACACTAGTTTCCCAATGAGCGGT
ATCGAATTCTGTGGAGAAATCAAAATAAGCTTGTACTTACTGACAGAACTTTTTGATCAT
CTAACTTTGTAGATAATATACCCCGGAAAAAACTATCTAGCAATTCTTTAATACATTGTG
ACTGTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6414#0      ACCTTTAGAGTTGAGAAGTTTACGCAGTTTGTCTAGATTATCTTTCGCTCGATTTAAACT 60
consensus_6414#1      ------------------------------------------------------------
                                                                                  

consensus_6414#0      AAGCAGAGATTCCAAAAACATGAGATCTGATATTGCAATTTGAGCACTAAGCAATTCATG 120
consensus_6414#1      ------------------------------------------------------------
                                                                                  

consensus_6414#0      TAGTATAACTACTTCTAGTTTTATTGATTGCGATATATGAAGAAATGCTTTGGTAAGTTC 180
consensus_6414#1      ------------------------------------------------------------
                                                                                  

consensus_6414#0      ATTTTCAGTAGTTGAAAGTTGATTTAATATACTTTTGAGAGAAATGATGAGTGAAGAACA 240
consensus_6414#1      ------------------------------------------------------------
                                                                                  

consensus_6414#0      GCTTGTAATAATAAGTAGGGGATTTTCTGCAATTTTTCGATATAATGATATTAATTGCCC 300
consensus_6414#1      ------------------------------------------------------------
                                                                                  

consensus_6414#0      TCTGGATGCAGTAAAGATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAAGT 360
consensus_6414#1      ----------------ATTCGCATATATACAGTGAAATAAAGCTCATTATTCGACAAGGT 44
                                      ***************************************** **

consensus_6414#0      AGGATTGTTGAATACACTATCAAAACCAGCACGCAGTGAGTTATATGATCCTAAACAGTC 420
consensus_6414#1      AGGATTGTTGAATACACTATCAAAACCAGCACGTAGTGAGTTATATGATCCTAAACAGTC 104
                      ********************************* **************************

consensus_6414#0      CTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTC 480
consensus_6414#1      CTCTTTTCGTGAAAATAAAGATTTATTAGGAAATATGTCGAGAGATAAATAATCACGCTC 164
                      ************************************************************

consensus_6414#0      AAGTCTACAAAACAAGTATAGTGCCTCATTATAAGTGAGTTTCGAATCGCCAAACACTAG 540
consensus_6414#1      AAGTCTACAAAACAAGTATAGTGCCTCATTATGAGTGAGTTTCGAATCGCCAAACACTAG 224
                      ******************************** ***************************

consensus_6414#0      TTTCCCAATGAGCGGTATCGAATTTGACAGAACT-------------------------- 574
consensus_6414#1      TTTCCCAATGAGCGGTATCGAATTCTGTGGAGAAATCAAAATAAGCTTGTACTTACTGAC 284
                      ************************     **                             

consensus_6414#0      ------------------------------------------------------------
consensus_6414#1      AGAACTTTTTGATCATCTAACTTTGTAGATAATATACCCCGGAAAAAACTATCTAGCAAT 344
                                                                                  

consensus_6414#0      ------------------------
consensus_6414#1      TCTTTAATACATTGTGACTGTGAT 368