cluster # 6415

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Schistosoma mansoni
cluster # 6415 cluster # 6415 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6415#0 length = 590 sequences # 1

consensus_6415#1 length = 210 sequences # 3

consensusID : consensus_6415#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [CACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGCAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTATTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCCGTAGTCTTGTAAGCTTCAGTATCCTGAGATTCAGTGATCATCTCGGTGGTTGCCGCATCGATTACAGTTTCTATTGTCAAACCACTTGATGTACCGAAGTATATTTGATCTGAACCATTGGCAACTATTTCTGCTATGTATTCCACAACCGCATTGCGAACAGNGTCTTCTGTCACTACAGCTGATGAAAAGTTCTCACTAGTGCTACTATAATCGATGACTAGCATCGCATTTCCAATAACTGATCCACGTGAGAAGCCAACAACTGTGCCAGTGACATTGATTATTCCCCTTGATGTAAGT]

[+] EMBL CD113699             [CACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGCAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTATTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCCGTAGTCTTGTAAGCTTCAGTATCCTGAGATTCAGTGATCATCTCGGTGGTTGCCGCATCGATTACAGTTTCTATTGTCAAACCACTTGATGTACCGAAGTATATTTGATCTGAACCATTGGCAACTATTTCTGCTATGTATTCCACAACCGCATTGCGAACAGNGTCTTCTGTCACTACAGCTGATGAAAAGTTCTCACTAGTGCTACTATAATCGATGACTAGCATCGCATTTCCAATAACTGATCCACGTGAGAAGCCAACAACTGTGCCAGTGACATTGATTATTCCCCTTGATGTAAGT]




>consensus_6415#0
CACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGCAATATCGATCTCCGTCGTCA
CTTCCGTCGTGTCAGTATTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCT
CCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCT
CCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTAA
TATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCCGTAGTCTTGTAAG
CTTCAGTATCCTGAGATTCAGTGATCATCTCGGTGGTTGCCGCATCGATTACAGTTTCTA
TTGTCAAACCACTTGATGTACCGAAGTATATTTGATCTGAACCATTGGCAACTATTTCTG
CTATGTATTCCACAACCGCATTGCGAACAGNGTCTTCTGTCACTACAGCTGATGAAAAGT
TCTCACTAGTGCTACTATAATCGATGACTAGCATCGCATTTCCAATAACTGATCCACGTG
AGAAGCCAACAACTGTGCCAGTGACATTGATTATTCCCCTTGATGTAAGT

consensusID : consensus_6415#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 210
fasta sequence

                              [GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC]

[-] EMBL CD164264             [GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC]
[-] EMBL CD164246             [GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC]
[-] EMBL CD164250             [GTCACCGTAATGTGGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC]




>consensus_6415#1
GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTA
GTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAATGTCGGTCTCC
GTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCC
TCACCTGTTGTCCTCTCCGTCTCCATCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6415#0      CACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGCAATATCGATCTCCGTCGTCA 60
consensus_6415#1      -----------------GTCTCCGTAATGTCGGTCTCCGTAATATCGATCTCCGTCGTCA 43
                                       ****** * *  ** ******* ********************

consensus_6415#0      CTTCCGTCGTGTCAGTATTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCT 120
consensus_6415#1      CTTCCGTCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCT 103
                      ***************** ******************************************

consensus_6415#0      CCGTAATGTCGGTCTCCGT---------------AATATCGATCTCCGTCGTCACTTCCG 165
consensus_6415#1      CCGTAATGTCGGTCTCCGTTATGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCG 163
                      *******************               **************************

consensus_6415#0      TCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACCTCAGTCTCCGTAA 225
consensus_6415#1      TCGTGTCAGTAGTCTCCTCACCTGTTGTCCTCTCCGTCTCCATCACC------------- 210
                      ***********************************************             

consensus_6415#0      TGTCGGTCTCCGTAATATCGATCTCCGTCGTCACTTCCGTCGTGTCAGTAGTCTCCTCAC 285
consensus_6415#1      ------------------------------------------------------------
                                                                                  

consensus_6415#0      CCGTAGTCTTGTAAGCTTCAGTATCCTGAGATTCAGTGATCATCTCGGTGGTTGCCGCAT 345
consensus_6415#1      ------------------------------------------------------------
                                                                                  

consensus_6415#0      CGATTACAGTTTCTATTGTCAAACCACTTGATGTACCGAAGTATATTTGATCTGAACCAT 405
consensus_6415#1      ------------------------------------------------------------
                                                                                  

consensus_6415#0      TGGCAACTATTTCTGCTATGTATTCCACAACCGCATTGCGAACAGNGTCTTCTGTCACTA 465
consensus_6415#1      ------------------------------------------------------------
                                                                                  

consensus_6415#0      CAGCTGATGAAAAGTTCTCACTAGTGCTACTATAATCGATGACTAGCATCGCATTTCCAA 525
consensus_6415#1      ------------------------------------------------------------
                                                                                  

consensus_6415#0      TAACTGATCCACGTGAGAAGCCAACAACTGTGCCAGTGACATTGATTATTCCCCTTGATG 585
consensus_6415#1      ------------------------------------------------------------
                                                                                  

consensus_6415#0      TAAGT 590
consensus_6415#1      -----