cluster # 6417

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Schistosoma mansoni
cluster # 6417 cluster # 6417 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6417#0 length = 396 sequences # 3

consensus_6417#1 length = 215 sequences # 1

consensusID : consensus_6417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 396
fasta sequence

                              [ACCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGCTGTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGATATTATTTTCTGTCCATATGATTATCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAA]

[+] EMBL CD202357             [ACCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGCTGTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGATATTATTTTCTGTCCATATGATTACCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAA ]
[-] EMBL CD202292             [ CCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCT TTATTCCGATTCCTAGCTGTCCATA TTTTGTTCGGGTTCATTAGCCAGATCTGCAGATATTATTATCTGTCCATATGATTATCTTCTGGACCCTATAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTATTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAA]
[-] EMBL CD145604             [ CCGTTCAGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGTTGTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGACATTATTTTCTGTCCATATGATTATCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAG         ]




>consensus_6417#0
ACCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGCT
GTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGATATTATTTTCTGTCCATATG
ATTATCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTA
TTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAA
TTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGAT
TTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTGTTATGC
AGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAA

consensusID : consensus_6417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [GCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGTGTAAACAAAAACATCGATTTTAAAACCAAAAGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAACAACACAACCAACGCAAGTATGGACTGGGCGAGAAA]

[+] EMBL CD191965             [GCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGTGTAAACAAAAACATCGATTTTAAAACCAAAAGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAACAACACAACCAACGCAAGTATGGACTGGGCGAGAAA]




>consensus_6417#1
GCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGA
GGCTTGTTCAACGTTAATTGCTATGTGTAAACAAAAACATCGATTTTAAAACCAAAAGGT
TGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAAC
AACACAACCAACGCAAGTATGGACTGGGCGAGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6417#0      ACCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGCT 60
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      GTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGATATTATTTTCTGTCCATATG 120
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      ATTATCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTA 180
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      TTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAA 240
consensus_6417#1      ------------------------------------------------------------
                                                                                  

consensus_6417#0      TTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGAT 300
consensus_6417#1      ----------GCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGAT 50
                                **************************************************

consensus_6417#0      TTGAACCAGAGGCTTGTTCAACGTTAATTGCTATG------------------------- 335
consensus_6417#1      TTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGTGTAAACAAAAACATCGATTTTAAA 110
                      ***********************************                         

consensus_6417#0      --------GTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAG 387
consensus_6417#1      ACCAAAAGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAG 170
                              ****************************************************

consensus_6417#0      CCGGTGAAA------------------------------------ 396
consensus_6417#1      CCGGTGAAACAACACAACCAACGCAAGTATGGACTGGGCGAGAAA 215
                      *********