These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 396 fasta sequence [ACCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGCTGTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGATATTATTTTCTGTCCATATGATTATCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAA] [+] EMBL CD202357 [ACCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGCTGTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGATATTATTTTCTGTCCATATGATTACCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAA ] [-] EMBL CD202292 [ CCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCT TTATTCCGATTCCTAGCTGTCCATA TTTTGTTCGGGTTCATTAGCCAGATCTGCAGATATTATTATCTGTCCATATGATTATCTTCTGGACCCTATAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTATTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAA] [-] EMBL CD145604 [ CCGTTCAGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGTTGTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGACATTATTTTCTGTCCATATGATTATCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTATTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAATTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAG ] consensusID : consensus_6417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [GCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGTGTAAACAAAAACATCGATTTTAAAACCAAAAGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAACAACACAACCAACGCAAGTATGGACTGGGCGAGAAA] [+] EMBL CD191965 [GCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGATTTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGTGTAAACAAAAACATCGATTTTAAAACCAAAAGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAGCCGGTGAAACAACACAACCAACGCAAGTATGGACTGGGCGAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6417#0 ACCGTTCGGGACCATGGGATATAGAAGATTTAGTACAAGCTCTTATTCCGATTCCTAGCT 60 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GTCCATATTTTTGTTCGCGTTCATTAGCCAGATCTGCAGATATTATTTTCTGTCCATATG 120 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 ATTATCTTCTGGACCCTCTAAATCGCTCTGCTACTTCTCTTGAAGTTACCGATCATATTA 180 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 TTATCTTGGATGAAGCGCATAATATAGAGGATGCCTCACGTGAAGCTGCTTCATTTACAA 240 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 TTACTGAGCAGCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGAT 300 consensus_6417#1 ----------GCAGTTAAAAAGTGCCAGGGATGACTTGGAAGGATTAAGAATAGTTGGAT 50 ************************************************** consensus_6417#0 TTGAACCAGAGGCTTGTTCAACGTTAATTGCTATG------------------------- 335 consensus_6417#1 TTGAACCAGAGGCTTGTTCAACGTTAATTGCTATGTGTAAACAAAAACATCGATTTTAAA 110 *********************************** consensus_6417#0 --------GTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAG 387 consensus_6417#1 ACCAAAAGGTTGATGGAATATTACGTGTTATGCAGTTAACATTATCACGCCTTGTTCGAG 170 **************************************************** consensus_6417#0 CCGGTGAAA------------------------------------ 396 consensus_6417#1 CCGGTGAAACAACACAACCAACGCAAGTATGGACTGGGCGAGAAA 215 ********* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||