These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CCTGTCCTTTCCAAACTGAAACTGATACGATTGAAACGTTACGTAAATAAACTCCTTGCTGTAAAGTGTAAACTATTACAAATTTGAATAATATATTTGTAAATTCCAGTGAATGAATTTGAAGTAAATCTAACGTTTCGCCTGGCAATCCGGTCCAAGCTTAGACCTCTCTGAGATTTTACAAATATATATATATTACTATTTATGTGTCTTTACATCAATCTCAGCGTCTCAAAAACTGTGAAACTATTCACTCTAATTTAGATGAAAGTTCTTATATATTACAAAATATGTTGATTTTAAAAAAAGATTTTTACATAGCACATCATTTACTGTTATTATATGAAGAAAATAGCAGATGTTCAAACATATTTATTCAAATATTATATTATCTTAATTTATAAAAGTATAAATTTTTTTTG] [+] EMBL AW063003 [CCTGTCCTTTCCAAACTGAAACTGATACGATTGAAACGTTACGTAAATAAACTCCTTGCTGTAAAGTGTAAACTATTACAAATTTGAATAATATATTTGTAAATTCCAGTGAATGAATTTGAAGTAAATCTAACGTTTCGCCTGGCAATCCGGTCCAAGCTTAGACCTCTCTGAGATTTTACAAATATATATATATTACTATTTATGTGTCTTTACATCAATCTCAGCGTCTCAAAAACTGTGAAACTATTCACTCTAATTTAGATGAAAGTTCTTATATATTACAAAATATGTTGATTTTAAAAAAAGATTTTTACATAGCACATCATTTACTGTTATTATATGAAGAAAATAGCAGATGTTCAAACATATTTATTCAAATATTATATTATCTTAATTTATAAAAGTATAAATTTTTTTTG] consensusID : consensus_642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [TTTTTTTTTTTTTTTTTTACGTTGAATATATATATNTATTTACTTGCATATTATGTGTACTTGCCATCAAAATTACCCCACCCCAACAAATTTAAGGGTTCTAAACATAAGGAAATCTANGAATANGGTGAATATTCAAGGAATAAACCATCATATCATGATCATTGATATAAGTATAATGAAAAAGAAT] [+] EMBL AI394817 [TTTTTTTTTTTTTTTTTTACGTTGAATATATATATNTATTTACTTGCATATTATGTGTACTTGCCATCAAAATTACCCCACCCCAACAAATTTAAGGGTTCTAAACATAAGGAAATCTANGAATANGGTGAATATTCAAGGAATAAACCATCATATCATGATCATTGATATAAGTATAATGAAAAAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_642#0 CCTGTCCTTTCCAAACTGAAACTGATACGATTGAAACGTTACGTAAATAAACTCCTTGCT 60 consensus_642#1 ------------------------------------------------------------ consensus_642#0 GTAAAGTGTAAACTATTACAAATTTGAATAATATATTTGTAAATTCCAGTGAATGAATTT 120 consensus_642#1 ------------------------------------------------------------ consensus_642#0 GAAGTAAATCTAACGTTTCGCCTGGCAATCCGGTCCAAGCTTAGACCTCTCTGAGATTTT 180 consensus_642#1 ------------------------------------------------------TTTTTT 6 **** consensus_642#0 ACAAATATATATATATT-ACTATTTATGTGTCTTTACATCAATCTCAGCGTCTCAAAAAC 239 consensus_642#1 TTTTTTTTTTTTACGTTGAATATATATATNTATTTACTTGCATATTA-TGTGTACTTGCC 65 * * * ** ** * *** *** * * ***** * ** * * ** * * consensus_642#0 TGTGAAACTATTCACTCTAATTTAGATGAAAGTTCTTATATATTACAAAATATGTTGATT 299 consensus_642#1 ATCAAAATTACCCCACCCCAACAAATTTAAGGGTTCTAAACATAAGGAAATCTAN-GAAT 124 *** ** * * * * * ** * * ** * ** * **** * ** * consensus_642#0 TTAAAAAAAGATTTTTACATAGCACATCAT-TTACTGTTATT-ATATGAAGAAAATAGCA 357 consensus_642#1 ANGGTGAATATTCAAGGAATAAACCATCATATCATGATCATTGATATAAGTATAATGAAA 184 ** * *** ****** * * * *** **** * * *** * consensus_642#0 GATGTTCAAACATATTTATTCAAATATTATATTATCTTAATTTATAAAAGTATAAATTTT 417 consensus_642#1 AAGAAT------------------------------------------------------ 190 * * consensus_642#0 TTTTG 422 consensus_642#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||