cluster # 6425

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Schistosoma mansoni
cluster # 6425 cluster # 6425 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6425#0 length = 572 sequences # 3

consensus_6425#1 length = 209 sequences # 1

consensusID : consensus_6425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 572
fasta sequence

                              [CAGCTGCTTACAGCCTACGAATTATCTTCTTTGCTCTAATATCAAAACCTCGCTACCTACCCCTAATTACACTAAACGAAAATAACCCCAAACTTATAAACCCCATTAAACGCTTAGCCATAGGAAGTATATTTGCAGGATTTATCATGACATACAACATCCCAACTACATCTATTCAAGTAATAACTATACCCTGATACTTAAAAACAACAGCAATCTTAGTCACTCTAATAGGATTCACTATCGCTTTAGAACAAAACAACCTAACATATAATCTAAAATCAAATACATCAACACTAACAAACTTATTCTCCACATCACTAGGGTATTTCACCCTTATCTTCCACCGCTTATTACCCAAAAAATTCCTAACTATAAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAATCT]

[+] EMBL CD168705             [CAGCTGCTTACAGCCTACGAATTATCTTCTTTGCTCTAATATCAAAACCTCGCTACCTACCCCTAATTACACTAAACGAAAATAACCCCAAACTTATAAACCCCATTAAACGCTTAGCCATAGGAAGTATATTTGCAGGATTTATCATGACATACAACATCCCAACTACATCTATTCAAGTAATAACTATACCCTGATACTTAAAAACAACAGCAATCTTAGTCACTCTAATAGGATTCACTATCGCTTTAGAACAAAACAACCTAACATATAATCTAAAATCAAATACATCAACACTAACAAACTTATTCTCCACATCACTAGGGTATTTCACCCTTATCTTCCACCGCTTATTACCCAAAAAATTCCTAACTATAAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAATCT]
[-] EMBL AI559054             [                                                                                                                                                                                                                                                                                                                                                                                                                              GACTGGAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATGAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAAT  ]
[+] EMBL AI413082             [                                                                                                                                                                                                                                                                                                                                                                                                                                     AACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTCCTATTTTACTAATTAGTTTCCACGAGTAATCT]




>consensus_6425#0
CAGCTGCTTACAGCCTACGAATTATCTTCTTTGCTCTAATATCAAAACCTCGCTACCTAC
CCCTAATTACACTAAACGAAAATAACCCCAAACTTATAAACCCCATTAAACGCTTAGCCA
TAGGAAGTATATTTGCAGGATTTATCATGACATACAACATCCCAACTACATCTATTCAAG
TAATAACTATACCCTGATACTTAAAAACAACAGCAATCTTAGTCACTCTAATAGGATTCA
CTATCGCTTTAGAACAAAACAACCTAACATATAATCTAAAATCAAATACATCAACACTAA
CAAACTTATTCTCCACATCACTAGGGTATTTCACCCTTATCTTCCACCGCTTATTACCCA
AAAAATTCCTAACTATAAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGG
AAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCA
ACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATTC
CTATTTTACTAATTAGTTTCCACGAGTAATCT

consensusID : consensus_6425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [TTGGAAGGGAAACATAAAAGATACAACATGACCATTGACTCCAGTTGTACTTTAAATTTTCTTTTTTAAAAAAAAGATTTAGGACCGGGCAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATTTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAAT]

[-] EMBL AW587560             [TTGGAAGGGAAACATAAAAGATACAACATGACCATTGACTCCAGTTGTACTTTAAATTTTCTTTTTTAAAAAAAAGATTTAGGACCGGGCAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTGGAAACTTCTATCCCCAAAGCCATTTCATATATAAATCTCACAGCCTCCCAAATCCTTGCCAACCAAAAAGGTTTAAT]




>consensus_6425#1
TTGGAAGGGAAACATAAAAGATACAACATGACCATTGACTCCAGTTGTACTTTAAATTTT
CTTTTTTAAAAAAAAGATTTAGGACCGGGCAGCTTTAACACACCCCTAAACATACTAGAC
TTAACATGACTGGAAACTTCTATCCCCAAAGCCATTTCATATATAAATCTCACAGCCTCC
CAAATCCTTGCCAACCAAAAAGGTTTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6425#0      CAGCTGCTTACAGCCTACGAATTATCTTCTTTGCTCTAATATCAAAACCTCGCTACCTAC 60
consensus_6425#1      ------------------------------------------------------------
                                                                                  

consensus_6425#0      CCCTAATTACACTAAACGAAAATAACCCCAAACTTATAAACCCCATTAAACGCTTAGCCA 120
consensus_6425#1      ------------------------------------------------------------
                                                                                  

consensus_6425#0      TAGGAAGTATATTTGCAGGATTTATCATGACATACAACATCCCAACTACATCTATTCAAG 180
consensus_6425#1      ------------------------------------------------------------
                                                                                  

consensus_6425#0      TAATAACTATACCCTGATACTTAAAAACAACAGCAATCTTAGTCACTCTAATAGGATTCA 240
consensus_6425#1      ------------------------------------------------------------
                                                                                  

consensus_6425#0      CTATCGCTTTAGAACAAAACAACCTAACATATAATCTAAAATCAAATACATCAACACTAA 300
consensus_6425#1      -----------------------------------TTGGAAGGGAA-ACATAAAAGATA- 23
                                                          *  **   ** **** **   ** 

consensus_6425#0      CAAACTTATTCTCCACATCACTAGGGTATTTCACCCTTATCTTCCACCGCTTATTACCCA 360
consensus_6425#1      CAACATGACCATTGACTCCA-------GTTGTACTTTAAATTTTC----TTTTTTAAAAA 72
                      ***  * *   *  **  **        **  **  * *  ** *     ** ***   *

consensus_6425#0      AAAAATTCCTAACTATA-AGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTG 419
consensus_6425#1      AAAGATTTAGGACCGGGCAGCTTTAACACACCCCTAAACATACTAGACTTAACATGACTG 132
                      *** ***    **     ******************************************

consensus_6425#0      GAAACTTCTATCCCCAAAGCCATCTCATATATAAATCTCACAGCCTCCCAAATCCTTGCC 479
consensus_6425#1      GAAACTTCTATCCCCAAAGCCATTTCATATATAAATCTCACAGCCTCCCAAATCCTTGCC 192
                      *********************** ************************************

consensus_6425#0      AACCAAAAAGGTTTAATTAAACTTTACTTCATATCCTTCCTCATTACTCTCCTTTCGATT 539
consensus_6425#1      AACCAAAAAGGTTTAAT------------------------------------------- 209
                      *****************                                           

consensus_6425#0      CCTATTTTACTAATTAGTTTCCACGAGTAATCT 572
consensus_6425#1      ---------------------------------