cluster # 6433

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Schistosoma mansoni
cluster # 6433 cluster # 6433 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6433#0 length = 625 sequences # 3

consensus_6433#1 length = 382 sequences # 1

consensusID : consensus_6433#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 625
fasta sequence

                              [CAACTGTCCGGATTGTCAAATAATAAACGTAATAAAAATTCACCTGGTTGATCAGCCGATATAAAACAAATCCAATAGATGCAAGTCGAGGAGCACGATGACGTAGACGACGACGATCAGCTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAATTAATTACCAGTCG-AACTGTTGATTTGCCCAGCGACTTGCACGGATATATGGTCGACCGCCACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGAATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAGGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTTTCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCTCTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTANACGGACTAAACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAACCAAATGCTTGNACCA-GTACAAATCCA]

[+] EMBL CD162001             [CAACTGTCCGGATTGTCAAATAATAAACGTAATAAAAATTCACCTGGTTGATCAGCCGATATAAAACAAATCCAATAGATGCAAGTCGAGGAGCACGATGACGTAGACGACGACGATCAGCTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAATTAATTACCAGTCG AACTGTTGATTTGCCCAGCGACTTGCACGGATATATGGTCGACCGCCACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGAATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAGGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATC                                                                                                                                                                                                                                  ]
[+] EMBL CD125349             [                                                                                                               GACGATCAGCTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAATTAATTACCAGTCGAAACTGAGGATTTGCCCAGTGACTTGCACGGATATATGGTCGACCGCCACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGAATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAGGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTTTCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCTCTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTANACGGACTAAACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAACCAAATGCTTGNACCA GTACAAATCCA]
[+] EMBL BG931086             [                                                                                                                                                                                                                                                                                                                                        gatatatGGGGGGTCTGTTAAGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTTTCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCTCTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTAAACGGACTAAACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAACCAAATGCTTG ACCAGGTACAAA    ]




>consensus_6433#0
CAACTGTCCGGATTGTCAAATAATAAACGTAATAAAAATTCACCTGGTTGATCAGCCGAT
ATAAAACAAATCCAATAGATGCAAGTCGAGGAGCACGATGACGTAGACGACGACGATCAG
CTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAAT
TAATTACCAGTCGAACTGTTGATTTGCCCAGCGACTTGCACGGATATATGGTCGACCGCC
ACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGA
ATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAGGTGACAAATATC
CAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTTT
CACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCTC
TGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTANACGGACTAA
ACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAACC
AAATGCTTGNACCAGTACAAATCCA

consensusID : consensus_6433#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [TGATCGTCGTCGTCTACGTCATCGTGCTCCTCGACTTGCATCTATTGGATTTGTTTTATATCGGCTTCCAGCTGGAGCTAATCCACCAATGCCACGTGGGTTTTTTGAAACTAACCATCATATAGCTAGTGTAGATTTTTTCTTCGATTCTAGAGAAGTTGTTAAACGTTTAAAATTAACACCAGGTCATTATCTTCTTGTTCCATGTACATATGCAGCTGATCAACCAGGTGAATTTTTATTACGTTTATTATTTGACAATCCGGATAGAATTTGCGAATCTACATTAGAGCGTGTAGAACTTAGTGGTTTAGCTGCAACTGGACCAGAGCCTGATCCAAACTATGAATTATTTCAGCCACGTCTTAGACGATTATTTCAT]

[+] EMBL CD147399             [TGATCGTCGTCGTCTACGTCATCGTGCTCCTCGACTTGCATCTATTGGATTTGTTTTATATCGGCTTCCAGCTGGAGCTAATCCACCAATGCCACGTGGGTTTTTTGAAACTAACCATCATATAGCTAGTGTAGATTTTTTCTTCGATTCTAGAGAAGTTGTTAAACGTTTAAAATTAACACCAGGTCATTATCTTCTTGTTCCATGTACATATGCAGCTGATCAACCAGGTGAATTTTTATTACGTTTATTATTTGACAATCCGGATAGAATTTGCGAATCTACATTAGAGCGTGTAGAACTTAGTGGTTTAGCTGCAACTGGACCAGAGCCTGATCCAAACTATGAATTATTTCAGCCACGTCTTAGACGATTATTTCAT]




>consensus_6433#1
TGATCGTCGTCGTCTACGTCATCGTGCTCCTCGACTTGCATCTATTGGATTTGTTTTATA
TCGGCTTCCAGCTGGAGCTAATCCACCAATGCCACGTGGGTTTTTTGAAACTAACCATCA
TATAGCTAGTGTAGATTTTTTCTTCGATTCTAGAGAAGTTGTTAAACGTTTAAAATTAAC
ACCAGGTCATTATCTTCTTGTTCCATGTACATATGCAGCTGATCAACCAGGTGAATTTTT
ATTACGTTTATTATTTGACAATCCGGATAGAATTTGCGAATCTACATTAGAGCGTGTAGA
ACTTAGTGGTTTAGCTGCAACTGGACCAGAGCCTGATCCAAACTATGAATTATTTCAGCC
ACGTCTTAGACGATTATTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6433#0      CAACTGTCCGGATTGTCAAATAATAAACGTAATAAAAATTCACCTGGTTGATCAGCCGAT 60
consensus_6433#1      ------------------------------------------------------------
                                                                                  

consensus_6433#0      ATAAAACAAATCCAATAGATGCAAGTCGAGGAGCACGATGACGTAGACGACGACGATCAG 120
consensus_6433#1      ------------------------------------------------------------
                                                                                  

consensus_6433#0      CTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAAT 180
consensus_6433#1      ------------------TGATCGTCGT-----CGTCTACGTCATCGTGCTCC--TCGAC 35
                                         * * ** *      * **    ****   * ***  *  * 

consensus_6433#0      TAATTACCAGTCGAACTGTTGATTTGCCCAGCGACTTGCACGGATATATGGTCGACCGCC 240
consensus_6433#1      TTGCATCTATTGGATTTGTT--TTATATCGGCTTCCAGCTGGAGCTAATCCACCAATGCC 93
                      *     * * * **  ****  **    * **  *  **  *     **   * *  ***

consensus_6433#0      ACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGA 300
consensus_6433#1      ACGTGG-GTTTTTTGAAACTAACCATCATATAGCTAG--TGTAGATTTTTTCTTCGATTC 150
                      ** **       * *** * * * * **  **  *    **  *     ** *   *   

consensus_6433#0      ATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAG-GTGACAAATAT 359
consensus_6433#1      TAGAGAAGTTGTTAAACGTTTAAAATTAACACCAGGTCATTATCTTCTTGTTCCATGTAC 210
                        ** ***   *  **  **** ** * **   ****   * * **   **  **  ** 

consensus_6433#0      CCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTT 419
consensus_6433#1      ATATGCAGCTGAT-CAACCAGGTGAATTTTTA--TTACGTTT---ATTATTTGACAATCC 264
                        *   **  **      **    *** ** *  * ** *     * * **    *    

consensus_6433#0      TCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCT 479
consensus_6433#1      GGATAGAATTTGCGAATCTACATTAGAGCG-TGTAGAACTTAGTGGTTTAGCTGCAACTG 323
                        *   *     *   *  **  *   * * ** *  *** **   **  * ** * *  

consensus_6433#0      CTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTANACGGACTA 539
consensus_6433#1      --GACCAGAGCCTGATCCAAACTAT--GAATT--ATTTCAGCCACGTCTTAGACG-ATTA 376
                        *****    *   ****  * *   *** *  *   **   *  ***** *** * **

consensus_6433#0      AACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAAC 599
consensus_6433#1      TTTCAT------------------------------------------------------ 382
                          *                                                       

consensus_6433#0      CAAATGCTTGNACCAGTACAAATCCA 625
consensus_6433#1      --------------------------