cluster # 6435

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Schistosoma mansoni
cluster # 6435 cluster # 6435 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6435#0 length = 393 sequences # 1

consensus_6435#1 length = 361 sequences # 2
consensus_6435#2 length = 343 sequences # 1

consensusID : consensus_6435#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [TGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGCAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAA]

[+] EMBL CD135759             [TGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGCAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAA]




>consensus_6435#0
TGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAG
TGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAA
CGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTC
GACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACAC
CTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGAC
GCAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGG
AGAAGACGAACCACTCTCGGACCACTGGGCGAA

consensusID : consensus_6435#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 361
fasta sequence

                              [TGACAAGTATGGAAAGAGACACAGACGAAGTGGGAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTGCACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGTGGNNNNNNNNNNNNNN]

[+] EMBL CD146658             [TGACAAGTATGGAAAGAGACACAGACGAAGTGGGAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTGCACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGTGGNNNNNNNNNNNNNN]
[+] EMBL CD133006             [                             GTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGACGAACCAC                                                             ]




>consensus_6435#1
TGACAAGTATGGAAAGAGACACAGACGAAGTGGGAGACCGAGGAGGCGAACCACACCGAC
ATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTG
CACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACC
GACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTA
CTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCAC
ACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGTGGNNNNNNNNNNNNN
N

consensusID : consensus_6435#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCGACTCGGTGCCTGAAGATGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACTTGTCAGTGTAGTAGGAGGTGGTGGCTCGATACAGGCGAAGGAGGAAGCGACAACCGAGAGTCGGTCCACCAGGCGAAATGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACG]

[-] EMBL CD141046             [AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCGACTCGGTGCCTGAAGATGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACTTGTCAGTGTAGTAGGAGGTGGTGGCTCGATACAGGCGAAGGAGGAAGCGACAACCGAGAGTCGGTCCACCAGGCGAAATGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACG]




>consensus_6435#2
AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCGACTCGGTGCCTGA
AGATGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACTT
GTCAGTGTAGTAGGAGGTGGTGGCTCGATACAGGCGAAGGAGGAAGCGACAACCGAGAGT
CGGTCCACCAGGCGAAATGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATT
CGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATT
GGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6435#0      TGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAG 60
consensus_6435#2      ----------------------AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCA 38
consensus_6435#1      -----------------TGACAAGTATGGAAAGAGACACAGACGAAGTGGGAGACCGAGG 43
                                            **    * * * *     * **                

consensus_6435#0      TGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAA 120
consensus_6435#2      TGCTGG-TCGACTCGGTGCCTGAAGATGTCGGTGTGGT----TCGCCTCCTCGGTCT--T 91
consensus_6435#1      AGGCGAACCACACCGACATCTTCAGGCACCGAGTCGAC-CAGCATGACAACCGAGGAGAC 102
                       *  *   *    *         **    **                     *       

consensus_6435#0      CGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTC 180
consensus_6435#2      CCACTTCGTCTGTGTCTCTTTCCAT--ACTTGTCAGTGTAGT---AGGAGGTGGTGGCTC 146
consensus_6435#1      CGACACCACCTCCTACTGCACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACC 162
                      * **  *  **                   **       *          ****  *  *

consensus_6435#0      GACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACAC 240
consensus_6435#2      GATACAGGCGAAGGAGGAAGCGACAACCGAGAGTCGGTCCACCAGGCGAAATGACAACAC 206
consensus_6435#1      GA-GGAGGCGAACCAC--ACCGACA-TCTTCAGGCACCGAGTCGACCAGCATGACAAC-C 217
                      **    * ** *  *     *****  *   ** *           *   * ****** *

consensus_6435#0      CTGGAGAGGAGTACGTGAACGTG----ACTGACAAATTCGGAAGAGTGGTGGCTCGACAC 296
consensus_6435#2      CTGGAGAGGAGTACGTGAACGTG----ACTGACAAATTCGGAAGAGTGGTGGCTCGACAC 262
consensus_6435#1      GAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGT 277
                        *****     **     * *     ******** *  ****           ***   

consensus_6435#0      CGACGCAGGAGGAGGCGA--CAAACCACAGTCG--GACCATTGGGCGAAACGACA--ACA 350
consensus_6435#2      CGACGTAGGAGGAGGCGA--CAAACCACAGTCG--GACCATTGGGCGAAACGACA--ACA 316
consensus_6435#1      GGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACA 337
                       ** *   **********  ** ***    **      **  * *   * *  **  ***

consensus_6435#0      CCTGGAGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAA 393
consensus_6435#2      CCTGGAGAGGAGTACGTGAACGTGACG---------------- 343
consensus_6435#1      ACCGAGGTGGNNNNNNNNNNNNNN------------------- 361
                       * *  * **