cluster # 6437

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Schistosoma mansoni
cluster # 6437 cluster # 6437 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6437#0 length = 418 sequences # 2

consensus_6437#1 length = 356 sequences # 1
consensus_6437#2 length = 188 sequences # 1

consensusID : consensus_6437#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence

                              [TGTATTGATTAGTAACTTTTTTAGACTTTCAGAATAATGGGGTTTATCGTTCTGACAAATGATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAACCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAAGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTCGGTTCATCATTTGTT]

[+] EMBL CD163699             [TGTATTGATTAGTAACTTTTTTAGACTTTCAGAATAATGGGGTTTATCGTTCTGACAAATGATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAACCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAAGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTCGGTTCATCATTTGTT]
[+] EMBL CD139216             [                                                GTTCTTACCCATGATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAATCATCACTAACCATGCTGATCATGCCATCACATGGCGAAAAAATAAAGTACTCTGAACCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGATAAAGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACCAAGTGACATCAA                                                                                        ]




>consensus_6437#0
TGTATTGATTAGTAACTTTTTTAGACTTTCAGAATAATGGGGTTTATCGTTCTGACAAAT
GATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAACCATCACTAACCATGCT
GATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAACCTTGAATGACCCCTAACAA
TTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATA
CGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAAGTTGCCTTCCCACCTAATTCAGTCAG
AACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATT
GTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTCGGTTCATCATTTGTT

consensusID : consensus_6437#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [GAGAAATATCTGGATCTGGATTTACACGAGGAACTGATTCAGTGAGTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAGCCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAGGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTACGGTTT]

[-] EMBL CD065181             [GAGAAATATCTGGATCTGGATTTACACGAGGAACTGATTCAGTGAGTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAGCCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAGGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTACGGTTT]




>consensus_6437#1
GAGAAATATCTGGATCTGGATTTACACGAGGAACTGATTCAGTGAGTAAACCATCACTAA
CCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAGCCTTGAATGACCC
CTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGG
TTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAGGTTGCCTTCCCACCTAATT
CAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAAC
AATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTACGGTTT

consensusID : consensus_6437#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [TCTGAAAGTCTAAAAAAGTTACTAATCAATACAATAAACGATGCGGGAGGGCGAATTTCTCTGAAGAAGCTTGTGAAAAGAGCCTCATCACATGTTTTGAATTCAAATGATCAAAAGGAAGTTAGTCTTACGAAAGAGGAAGTGAAAAGTAAAATTGTGGGAAAAGTCAATAAAAGTCAGTCTATGAA]

[+] EMBL CD098366             [TCTGAAAGTCTAAAAAAGTTACTAATCAATACAATAAACGATGCGGGAGGGCGAATTTCTCTGAAGAAGCTTGTGAAAAGAGCCTCATCACATGTTTTGAATTCAAATGATCAAAAGGAAGTTAGTCTTACGAAAGAGGAAGTGAAAAGTAAAATTGTGGGAAAAGTCAATAAAAGTCAGTCTATGAA]




>consensus_6437#2
TCTGAAAGTCTAAAAAAGTTACTAATCAATACAATAAACGATGCGGGAGGGCGAATTTCT
CTGAAGAAGCTTGTGAAAAGAGCCTCATCACATGTTTTGAATTCAAATGATCAAAAGGAA
GTTAGTCTTACGAAAGAGGAAGTGAAAAGTAAAATTGTGGGAAAAGTCAATAAAAGTCAG
TCTATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6437#0      TGTATTGATTAGTAACTTTTTTAGACTTTCAGAATAATGGGGTTTATCGTTCTGACAAAT 60
consensus_6437#1      -----------------------------------------------------GAGAAAT 7
consensus_6437#2      ------------------------------------------------------------
                                                                                  

consensus_6437#0      GATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAACCATCACTAACCATGCT 120
consensus_6437#1      ATCTGGATCTGGATTTACACGAGGAACTGATTCAGTGAGTAAACCATCACTAACCATGCT 67
consensus_6437#2      -----TCTGAAAGTCTAAAAAAGTTACTAATCAATACAATAAACGATGCGGGAGGGCGAA 55
                                   * *  *  **  *** **  *   * ***** **     *    *  

consensus_6437#0      GATCATACCATCACATGGCGAAAAAA------TAAAGTACTCTGAACCTTGAATGACCCC 174
consensus_6437#1      GATCATACCATCACATGGCGAAAAAA------TAAAGTACTCTGAGCCTTGAATGACCCC 121
consensus_6437#2      TTTCTCTGAAGAAGCTTGTGAAAAGAGCCTCATCACATGTTTTGAAT-TCAAATGATCAA 114
                        **     *  *  * * ***** *      * *  *  * ***   *  ***** *  

consensus_6437#0      TAACAATTTGGCTTTA-AACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGG 233
consensus_6437#1      TAACAATTTGGCTTTA-AACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGG 180
consensus_6437#2      AAGGAAGTTAGTCTTACGAAAGAGGAAGTGAAAAGTAAAATTGTGGGAAAAGT----CAA 170
                       *  ** ** *  ***  *         **  * * *   ******* *****       

consensus_6437#0      TTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAAGTTGCCTTCCCACCTAATT 293
consensus_6437#1      TTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAGGTTGCCTTCCCACCTAATT 240
consensus_6437#2      TAAAAGTCAGTCTATGAA------------------------------------------ 188
                      *   *  *   ** * **                                          

consensus_6437#0      CAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAAC 353
consensus_6437#1      CAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAAC 300
consensus_6437#2      ------------------------------------------------------------
                                                                                  

consensus_6437#0      AATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTT-CGGTTCATCA 412
consensus_6437#1      AATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTACGGTTT---- 356
consensus_6437#2      ------------------------------------------------------------
                                                                                  

consensus_6437#0      TTTGTT 418
consensus_6437#1      ------
consensus_6437#2      ------