cluster # 6442

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Schistosoma mansoni
cluster # 6442 cluster # 6442 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6442#0 length = 591 sequences # 2

consensus_6442#1 length = 572 sequences # 1
consensus_6442#2 length = 438 sequences # 1

consensusID : consensus_6442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 591
fasta sequence

                              [CTAACTACACTGAATATAAAAGCGAATCAATTCAACAACAAAATCTCTTACCTTTTTTAGACATTCCTGCAGCCAAACATCGACGAAAACGACAACTTTTACAAGCATTTCTACTTCGAGGTGTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCTTCAGTACGACGAAAGAAACCCTAAAACAAACGAAGACAAAATATAAACTTGACAGGAAAAACTTTTGATAAATTGACAAGTTGAAGGAAAAGTTCAACATTACTTTTTGCCTACTGTATTTCCTCCAGATACAAGATAATTATAAATGGAGAAGGTAACACTGACATCATTCATACATTGTCTTATATAGAAACAGTAATCTCTTCACAATGGATTCTAAGGAATAAAACAGCTTATGATATTGACGAATC-TTTTTTTTTATTTTTTATCAATTAAGAATAGGATAATATCGAAAGACAATTTTTAGTTGGAAAAACAGAAACGTTTCATGTGTCAGACTACCAACCGTCGTTCTACCATACAATAGTCTTTCTGATTTTTTACTGTTGACTTATTAGGTTAATAGGTAAACCTG]

[+] EMBL CD086832             [CTAACTACACTGAATATAAAAGCGAATCAATTCAACAACAAAATCTCTTACCTTTTTTAGACATTCCTGCAGCCAAACATCGACGAAAACGACAACTTTTACAAGCATTTCTACTTCGAGGTGTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCTTCAGTACGACGAAAGAAACCCTAAAACAAACGAAGACAAAATATAAACTTGACAGGAAAAACTTTTGATAAATTGACAAGTTGAAGGAAAAGTTCAACATTACTTTTTGCCTACTGTATTTCCTCCAGATACAAGATAATTATAAATGGAGAAGGTAACACTGACATCATTCATACATTGTCTTATATAGAAACAGTAATCTCTTCACAATGGATTCTAAGGAATAAAACAGCTTATGATATTGACGAATC TTTTTTTTTATTTTTTATCAATTAAGAATAGGATAATATCGAAAGACAATTTTTAGTTGGAAAAACAGAAACGTTTCATGTGTCAGACTACCAACCGTCGTTCTACCATACAATAGTCTTTCTGATTTTTTACTGTTGACTTATTAGGTTAATAGGTAAACCT ]
[-] EMBL CD086865             [                                                                                    GAAAACGACAACTTTTACAAGCATTTCTACTTCGAGGTGTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCTTCAGTACGACGAAAGAAACCCTAAAACAAACGAAGACAAAATATAAACTTGACAGGAAAAACTTTTGATAAATTGACAAGTTGAAGGAAAAGTTCAACATTACTTTTTGCCTACTGTATTTCCTCCAGATACAAGATAATTATAAATGGAGAAGGTAACACTGACATCATTCATACATTGTCTTATATAGAAACAGTAATCTCTTCACAATGGATTCTAAGGAATAAAACAGCTTATGATATTGACGAATCTTTTTTTTTTATTTTTTATCAATTAAGAATAGGATAATATCGAAAGACAATTTTTAGTTGGAAAAACAGAAACGTTTCATGTGTCAGACTACCAACCGTCGTTCTACCATACAATAGTCTTTCTGATTTTTTACTGTTGACTTATTAGGTTAATAGGTAAACCTG]




>consensus_6442#0
CTAACTACACTGAATATAAAAGCGAATCAATTCAACAACAAAATCTCTTACCTTTTTTAG
ACATTCCTGCAGCCAAACATCGACGAAAACGACAACTTTTACAAGCATTTCTACTTCGAG
GTGTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCTTCAG
TACGACGAAAGAAACCCTAAAACAAACGAAGACAAAATATAAACTTGACAGGAAAAACTT
TTGATAAATTGACAAGTTGAAGGAAAAGTTCAACATTACTTTTTGCCTACTGTATTTCCT
CCAGATACAAGATAATTATAAATGGAGAAGGTAACACTGACATCATTCATACATTGTCTT
ATATAGAAACAGTAATCTCTTCACAATGGATTCTAAGGAATAAAACAGCTTATGATATTG
ACGAATCTTTTTTTTTATTTTTTATCAATTAAGAATAGGATAATATCGAAAGACAATTTT
TAGTTGGAAAAACAGAAACGTTTCATGTGTCAGACTACCAACCGTCGTTCTACCATACAA
TAGTCTTTCTGATTTTTTACTGTTGACTTATTAGGTTAATAGGTAAACCTG

consensusID : consensus_6442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [ATAATAAAGATAAGGGTGGTTGTGTTGGCTTACAATCATTCGACATTAATAAATTATCTTGTTTTAATGAAGAATTTATCGGATTTATTGCAGCTGAACTATAATTAGGACCAATCTTATCATCATTATTATCATTATCACTTCGACTTATATGTCGATAATGATTTAGGGATGAAGTTAATGGATCACTACTACCGCTCCCAAATCCAACAACTCCTCCACCACTAAGATTATATTGACTATATGGAGGACAGCCTGTGGAACTTTGGCTCGGTGATAATCCATCTGTTGAACTGGATGAATTACCACGAATAGCTTGTAGTTGTTTAATTTCAATGGCACAGTGAAATTTGACTGCATTTGGTTGACGATTAGCAGTTGTATTATTTGCCATTGTTGCATTTGATGATGTATTTGTATTAATTGTTGTCAGTGTAGGAGTAGTAGTAGTACTATTGCATGTAGTAGTATTGAGAGTTGAGTTTGAAAAGCTGGAGGTAGGTAGTTTCACTTTATTAACACGTTCATTCTCTGAGTTCGGTATAGTAGATGTACATGTTTGCACCTGAGAT]

[+] EMBL CD094451             [ATAATAAAGATAAGGGTGGTTGTGTTGGCTTACAATCATTCGACATTAATAAATTATCTTGTTTTAATGAAGAATTTATCGGATTTATTGCAGCTGAACTATAATTAGGACCAATCTTATCATCATTATTATCATTATCACTTCGACTTATATGTCGATAATGATTTAGGGATGAAGTTAATGGATCACTACTACCGCTCCCAAATCCAACAACTCCTCCACCACTAAGATTATATTGACTATATGGAGGACAGCCTGTGGAACTTTGGCTCGGTGATAATCCATCTGTTGAACTGGATGAATTACCACGAATAGCTTGTAGTTGTTTAATTTCAATGGCACAGTGAAATTTGACTGCATTTGGTTGACGATTAGCAGTTGTATTATTTGCCATTGTTGCATTTGATGATGTATTTGTATTAATTGTTGTCAGTGTAGGAGTAGTAGTAGTACTATTGCATGTAGTAGTATTGAGAGTTGAGTTTGAAAAGCTGGAGGTAGGTAGTTTCACTTTATTAACACGTTCATTCTCTGAGTTCGGTATAGTAGATGTACATGTTTGCACCTGAGAT]




>consensus_6442#1
ATAATAAAGATAAGGGTGGTTGTGTTGGCTTACAATCATTCGACATTAATAAATTATCTT
GTTTTAATGAAGAATTTATCGGATTTATTGCAGCTGAACTATAATTAGGACCAATCTTAT
CATCATTATTATCATTATCACTTCGACTTATATGTCGATAATGATTTAGGGATGAAGTTA
ATGGATCACTACTACCGCTCCCAAATCCAACAACTCCTCCACCACTAAGATTATATTGAC
TATATGGAGGACAGCCTGTGGAACTTTGGCTCGGTGATAATCCATCTGTTGAACTGGATG
AATTACCACGAATAGCTTGTAGTTGTTTAATTTCAATGGCACAGTGAAATTTGACTGCAT
TTGGTTGACGATTAGCAGTTGTATTATTTGCCATTGTTGCATTTGATGATGTATTTGTAT
TAATTGTTGTCAGTGTAGGAGTAGTAGTAGTACTATTGCATGTAGTAGTATTGAGAGTTG
AGTTTGAAAAGCTGGAGGTAGGTAGTTTCACTTTATTAACACGTTCATTCTCTGAGTTCG
GTATAGTAGATGTACATGTTTGCACCTGAGAT

consensusID : consensus_6442#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [GTGATAATCCATCTGTTGAACTGGATGAATTACCACGAATAGCTTGTAGTTGTTTAATTTCAATGGCACAATGAAATTTGACTGCATTCGGTTGACGACCGATTCGGCTACCTTTTTTAGACATTCCTGCAGCTAAACATCGACGAAAACGACAACTTTTACAAGCATTTCTACTTCGAGGTGTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCTTCAGTACGACGAAAGAAACCTTTACATCCTTCACATGTCAATGCACCGAAATGAAATCCAGACGATCTACCGCCACACACTCGACAAGGAATATTAGAAATATCGATTTCTGATTGAGTTTCTGGATCTTTCATTTTCATCCCAACTAGTAAGCATTTACGGTAACGACAAATTTGACATTTCCCACGACTACCTTTAGCCA]

[-] EMBL CD114537             [GTGATAATCCATCTGTTGAACTGGATGAATTACCACGAATAGCTTGTAGTTGTTTAATTTCAATGGCACAATGAAATTTGACTGCATTCGGTTGACGACCGATTCGGCTACCTTTTTTAGACATTCCTGCAGCTAAACATCGACGAAAACGACAACTTTTACAAGCATTTCTACTTCGAGGTGTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCTTCAGTACGACGAAAGAAACCTTTACATCCTTCACATGTCAATGCACCGAAATGAAATCCAGACGATCTACCGCCACACACTCGACAAGGAATATTAGAAATATCGATTTCTGATTGAGTTTCTGGATCTTTCATTTTCATCCCAACTAGTAAGCATTTACGGTAACGACAAATTTGACATTTCCCACGACTACCTTTAGCCA]




>consensus_6442#2
GTGATAATCCATCTGTTGAACTGGATGAATTACCACGAATAGCTTGTAGTTGTTTAATTT
CAATGGCACAATGAAATTTGACTGCATTCGGTTGACGACCGATTCGGCTACCTTTTTTAG
ACATTCCTGCAGCTAAACATCGACGAAAACGACAACTTTTACAAGCATTTCTACTTCGAG
GTGTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCTTCAG
TACGACGAAAGAAACCTTTACATCCTTCACATGTCAATGCACCGAAATGAAATCCAGACG
ATCTACCGCCACACACTCGACAAGGAATATTAGAAATATCGATTTCTGATTGAGTTTCTG
GATCTTTCATTTTCATCCCAACTAGTAAGCATTTACGGTAACGACAAATTTGACATTTCC
CACGACTACCTTTAGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6442#0      -----------------------------------------------------------C 1
consensus_6442#2      GTGATAATCCATCTGTTGAACTGGATGAATTACCACGAATAGCTTGTAGTTGTTTAATTT 60
consensus_6442#1      ----------------------------ATAATAAAGATAAGGGTGGTTGTGTTGGCTTA 32
                                                                                  

consensus_6442#0      TAACTACACTG-AATATAAAAGCGAATCAATTCAACAACAAAATCTCTTACCTTTTTTAG 60
consensus_6442#2      CAATGGCACAATGAAATTTGACTGCATTCGGTTGACGACCGATTCGGCTACCTTTTTTAG 120
consensus_6442#1      CAATCATTCGACATTAATAAATTATCTTGTTTTAATGAAGAATTTATCGGATTTATTGCA 92
                       **     *      *    *     *    *  *  *   * *        ** **   

consensus_6442#0      ACATTCCTGCAGCCAAACATCGACGAAAACGACA--ACTTTTACAAGCATTTCTACTTCG 118
consensus_6442#2      ACATTCCTGCAGCTAAACATCGACGAAAACGACA--ACTTTTACAAGCATTTCTACTTCG 178
consensus_6442#1      GCTGAACTATAATTAGG-ACCAATCTTATCATCATTATTATCATTATCACTTCGACTTAT 151
                       *    **  *   *   * * *    * *  **  * * * *  * ** *** ****  

consensus_6442#0      AGGT--GTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCT 176
consensus_6442#2      AGGT--GTTATAGTGCAAGCATTTTGACCACCTACACAAACTAATGAATTAGATGATCCT 236
consensus_6442#1      ATGTCGATAATGATTTAGGGATGAAGTTAATGGATCACTACTACCGCTCCCAA--ATCCA 209
                      * **   * **  *  * * **   *   *   *     ****  *      *  **** 

consensus_6442#0      TCAGTACGACGAAAGAAACCCTAAAACAAACGAAGACAAAATATAAACTTGACAGGAAAA 236
consensus_6442#2      TCAGTACGACGAAAGAAACCTTTACATCCTTCACATGTCAATGCA---CCGAAATGAAAT 293
consensus_6442#1      ACAACTCCTCCACCACTAAGATTATATTGACTATATGGAGGACAGCCTGTGGAACTTTGG 269
                       **   *  * *     *   * * *      *                 *  *      

consensus_6442#0      ACTTTTGATAAATTGACA---AGTTGAAGGAAAAGTTCAACATTACTTTTTGCCTACTGT 293
consensus_6442#2      CCAGACGATCTACCGCCACACACTCGACAAGGAATATTAGAAATATCGATTTCTGATTGA 353
consensus_6442#1      CTCGGTGATAATCCATCTGTTGAACTGGATGAATTACCACGAATAGCTTGTAGTTGTTTA 329
                            ***       *               *     *  * **     *      *  

consensus_6442#0      ATTTCCTCCAGATACAAGATAATTATAAATGGAGAAGGTAACACTGACATCATTCATACA 353
consensus_6442#2      GTTTCTGGATCTTTCATTTTCATCCCAACTAGTAAGCATT-TACGGTAACGACAAATTTG 412
consensus_6442#1      ATTTC--AATGGCACAGTGAAATT-TGACTGCATTTGGTT-GACGATTA--GCAGTTGTA 383
                       ****         **     **    * *        *   **    *       *   

consensus_6442#0      TTGTCTTATATAGAAACAGTAATCTCTTCACAATGGATTCTAAGGAATAAAACAGCTTAT 413
consensus_6442#2      ACATTTCCCACGACTACCTTTAGCCA---------------------------------- 438
consensus_6442#1      TTATTTGCCATTGTTGCATTTGATGATGTATT-TGTATTAATTGTTGTCAGTGTAGGAGT 442
                         * *   *      *  *                                        

consensus_6442#0      GATATTGACGAATCTTTTTTTTTATTTTTTATCAATTAAGAATAGGATAATATCGAAAGA 473
consensus_6442#2      ------------------------------------------------------------
consensus_6442#1      AGTAGTAGTACTATTGCATGTAGTAGTATTGAGAGTTGAGTTTGAAAAGCTGGAGGTAGG 502
                                                                                  

consensus_6442#0      CAATTTTTAGTTGGAAAAACAGAAACGTTTCATGTGTCAGACTACCAACCGTCGTTCTAC 533
consensus_6442#2      ------------------------------------------------------------
consensus_6442#1      TAGTTTCACTTTATTAACACGTTCATTCTCTGAGTTCGGTATAGTAGATGTACATGTTTG 562
                                                                                  

consensus_6442#0      CATACAATAGTCTTTCTGATTTTTTACTGTTGACTTATTAGGTTAATAGGTAAACCTG 591
consensus_6442#2      ----------------------------------------------------------
consensus_6442#1      CACCTGAGAT------------------------------------------------ 572