These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 644 fasta sequence [ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCCANAAG] [+] EMBL CD082212 [ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCCANAAG] [-] EMBL CD065237 [ ATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGGTTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAANCGNAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCGCCGGGATGTTGGGGACAATGTTTATACA ] [-] EMBL CD097509 [ TTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCAAAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACCCCATCTAATGCCAAAA ] consensusID : consensus_6443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATATTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATA] [+] EMBL CD140100 [ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATATTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6443#0 ------------------------------------------------------------ consensus_6443#1 ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATA 60 consensus_6443#0 ---------------------ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATAT 39 consensus_6443#1 TTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATAT 120 *** * * * ************************ consensus_6443#0 CTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTG 99 consensus_6443#1 CTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTG 180 ************************** ********************************* consensus_6443#0 AAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACAT 159 consensus_6443#1 AAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACAT 240 ************************************************************ consensus_6443#0 CTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAG 219 consensus_6443#1 CTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAG 300 ************************************************************ consensus_6443#0 CGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGAT 279 consensus_6443#1 CGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGAT 360 ************************************************************ consensus_6443#0 ATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTT 339 consensus_6443#1 ATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTT 420 ************************************************************ consensus_6443#0 CGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCAT 399 consensus_6443#1 CGTGATATTTTTCATCATGATA-------------------------------------- 442 ********************** consensus_6443#0 GATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTT 459 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 GGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTT 519 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 ATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTC 579 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 ATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCC 639 consensus_6443#1 ------------------------------------------------------------ consensus_6443#0 ANAAG 644 consensus_6443#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||