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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 644 fasta sequence
[ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCCANAAG]
[+] EMBL CD082212 [ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCCANAAG]
[-] EMBL CD065237 [ ATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGGTTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAANCGNAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCGCCGGGATGTTGGGGACAATGTTTATACA ]
[-] EMBL CD097509 [ TTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCAAAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACCCCATCTAATGCCAAAA ]
consensusID : consensus_6443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATATTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATA]
[+] EMBL CD140100 [ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATATTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6443#0 ------------------------------------------------------------
consensus_6443#1 ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATA 60
consensus_6443#0 ---------------------ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATAT 39
consensus_6443#1 TTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATAT 120
*** * * * ************************
consensus_6443#0 CTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTG 99
consensus_6443#1 CTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTG 180
************************** *********************************
consensus_6443#0 AAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACAT 159
consensus_6443#1 AAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACAT 240
************************************************************
consensus_6443#0 CTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAG 219
consensus_6443#1 CTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAG 300
************************************************************
consensus_6443#0 CGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGAT 279
consensus_6443#1 CGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGAT 360
************************************************************
consensus_6443#0 ATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTT 339
consensus_6443#1 ATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTT 420
************************************************************
consensus_6443#0 CGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCAT 399
consensus_6443#1 CGTGATATTTTTCATCATGATA-------------------------------------- 442
**********************
consensus_6443#0 GATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTT 459
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 GGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTT 519
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 ATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTC 579
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 ATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCC 639
consensus_6443#1 ------------------------------------------------------------
consensus_6443#0 ANAAG 644
consensus_6443#1 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||