cluster # 6443

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Schistosoma mansoni
cluster # 6443 cluster # 6443 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6443#0 length = 644 sequences # 3

consensus_6443#1 length = 442 sequences # 1

consensusID : consensus_6443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 644
fasta sequence

                              [ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCCANAAG]

[+] EMBL CD082212             [ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCCANAAG]
[-] EMBL CD065237             [                                                                                                                                                                                                             ATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGGTTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATAAANCGNAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCGCCGGGATGTTGGGGACAATGTTTATACA                                                                                                                                                                       ]
[-] EMBL CD097509             [                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCAAAGCCAATTTCATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACCCCATCTAATGCCAAAA ]




>consensus_6443#0
ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTA
TACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGAC
ACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGT
CACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTA
TATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGG
GCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGAT
AAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCATGATATTGGATTTCATTATGCC
ACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTTGGGGACAATGTTTATACACCG
CCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTTATTGCAAACAGTATCGCTTTT
GAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTCATATTGAGATTGATCGCGAGA
TATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCCANAAG

consensusID : consensus_6443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATATTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATA]

[+] EMBL CD140100             [ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATATTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATATCTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTGAAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACATCTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAGCGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGATATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTTCGTGATATTTTTCATCATGATA]




>consensus_6443#1
ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATA
TTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATAT
CTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTG
AAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACAT
CTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAG
CGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGAT
ATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTT
CGTGATATTTTTCATCATGATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6443#0      ------------------------------------------------------------
consensus_6443#1      ATGAATACCAGAAGGCTGTTCAGCATCCAATTTCCTCCAGAAACTCCTATTCTCATTATA 60
                                                                                  

consensus_6443#0      ---------------------ATTCTCGGTACGAGGGCTTTAATATGGGTGTGTGAATAT 39
consensus_6443#1      TTTCGAGGAAGGTGGTGCTTGATTTTGTATTTGGCTGCTTTAATATGGGTGTGTGAATAT 120
                                           *** *   *  *   ************************

consensus_6443#0      CTTGTTTATTACTTCACACTATACAGCTGTAATTGGCCCAACCTACCCAGTGCTAGTGTG 99
consensus_6443#1      CTTGTTTATTACTTCACACTATACAGTTGTAATTGGCCCAACCTACCCAGTGCTAGTGTG 180
                      ************************** *********************************

consensus_6443#0      AAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACAT 159
consensus_6443#1      AAAAACATACAAAATCCAGACACTGCAGTTGTCAATTTAATGGTACTAGCAGACACACAT 240
                      ************************************************************

consensus_6443#0      CTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAG 219
consensus_6443#1      CTCGTTGGATACGTCCTAGGTCACCCCATTGACCGCATTAGAAGAGATTGGCAAATGAAG 300
                      ************************************************************

consensus_6443#0      CGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGAT 279
consensus_6443#1      CGTGCTTTCCAAGCTTCCTTATATTTACATAATCCCAATGCCGTTATAATATTAGGAGAT 360
                      ************************************************************

consensus_6443#0      ATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTT 339
consensus_6443#1      ATTTTGGATGAAGGGAAATGGGCTACAAATGATGATTTCAACTATCTGGTGGAAAGATTT 420
                      ************************************************************

consensus_6443#0      CGTGATATTTTTCATCATGATAAAACGAAAACATTAGTTAAAACTGTTGTTGGGAATCAT 399
consensus_6443#1      CGTGATATTTTTCATCATGATA-------------------------------------- 442
                      **********************                                      

consensus_6443#0      GATATTGGATTTCATTATGCCACCAATGAGTTTTTGAATCATCGATTCCACCGGGATGTT 459
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      GGGGACAATGTTTATACACCGCCTATTTATCTATGGTCTTTTTTTGGCATCCATTTCGTT 519
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      ATTGCAAACAGTATCGCTTTTGAAGGTGATAATTGTGATTTATGTTTCANAGCCAATTTC 579
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      ATATTGAGATTGATCGCGAGATATCTTGATTGTTTGAAGTTATCTACTCCATCTAATGCC 639
consensus_6443#1      ------------------------------------------------------------
                                                                                  

consensus_6443#0      ANAAG 644
consensus_6443#1      -----