cluster # 6445

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6445 cluster # 6445 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6445#0 length = 1133 sequences # 3

consensus_6445#1 length = 414 sequences # 1

consensusID : consensus_6445#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1133
fasta sequence

                              [AATTCCACTGAAAAACAAATAACTTTTGGGGAAAACATAGTTACTAGAGGTAATAATGCCACACCACCTGTATCAAATAAACCTACACGATCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTTTTTGGAGTACCTTCAATCGGTTGGACAATAGTCGTACATCATGTTCCTCGATTGATCATGAGAAATCATTGCCTAAAGATCATATTGACATAATCTTGGATGTCTTGGAGGAGAAGCCAATAATTTCTGAATCCCTCAATACTGCTAATCCTATTACAGTTACTAATAAAACTGGTACAATGTCTTCAACGATGAAAAACTCTTGTATTCCTATTACTACTTCCAGTATCAATACATCCCCTGCAATTCCACCTAAGCCAAGTTATTTATCTAATACAATTTATTCAACTTTACCTAATCGAAGTTCACATCTGAATAGAAATAGTTCTGTTCAACCTTGTTCAAATTTACCTGTCCTCTATGATTCTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAACAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAAATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAAATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTGAAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATAGACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGTTCCCAGTGACTTATGTAAAACGTTTATCTGATAATTGATTTATGCCAGTGCAATTATATACATGTTCATTTCTACCTTCTTATTTTGATCCTCATCAGCATTTTCATCGAAATCTGTCACTTTCGTGGAGCTACCATCCGCACCATATTTTATATAATCACACAATATTATTTCC]

[-] EMBL CD065242             [AATTCCACTGAAAAACAAATAACTTTTGGGGAAAACATAGTTACTAGAGGTAATAATGCCACACCACCTGTATCAAATAAACCTACACGATCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTTTTTGGAGTACCTTCAATCGGTTGGACAATAGTCGTACATCATGTTCCTCGATTGATCATGAGAAATCATTGCCTAAAGATCATATTGACATAATCTTGGATGTCTTGGAGGAGAAGCCAATAATTTCTGAATCCCTCAATACTGCTAATCCTATTACAGTTACTAATAAAACTGGTACAATGTCTTCAACGATGAAAAACTCTTGTATTCCTATTACTACTTCCAGTATCAATACATCCCCTGCAATTCCACCTAAGCCAAGTTATTTATCTAATACAATTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BF936960             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCCCTGCAATTCCACCTAAGCCAAGTTATTTATCTAATACAATTTATTCAACTTTACCTAATCGAAGTTCACATCTGAATAGAAATAGTTCTGTTCAACCTTGTTCAAATTTACCTGTCCTCTATGATTCTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAACAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAAATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAAATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTGAAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATAGACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGTTCCCAGTGACTTATGTAAAACGTTTATCTGATAATTGATTTATGCCAGTGCAATTATATACATGTTCATTTCTACCTTCTTATTTTGATCCTCATCAGCATTTTCATCGAAATCTGTCACTTTCGTGGAGCTACCATCCGCACCATATTTTATATAATCACACAATATTATTTCC]
[-] EMBL CD167165             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCCTCTATGATTCTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAACAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAAATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAAATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTGAAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATAGACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGTTCCCAGT                                                                                                                                                                        ]




>consensus_6445#0
AATTCCACTGAAAAACAAATAACTTTTGGGGAAAACATAGTTACTAGAGGTAATAATGCC
ACACCACCTGTATCAAATAAACCTACACGATCTTACAGTCAACATTCACCTTCAATTCAT
TATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCT
GTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTTTTTGGAGT
ACCTTCAATCGGTTGGACAATAGTCGTACATCATGTTCCTCGATTGATCATGAGAAATCA
TTGCCTAAAGATCATATTGACATAATCTTGGATGTCTTGGAGGAGAAGCCAATAATTTCT
GAATCCCTCAATACTGCTAATCCTATTACAGTTACTAATAAAACTGGTACAATGTCTTCA
ACGATGAAAAACTCTTGTATTCCTATTACTACTTCCAGTATCAATACATCCCCTGCAATT
CCACCTAAGCCAAGTTATTTATCTAATACAATTTATTCAACTTTACCTAATCGAAGTTCA
CATCTGAATAGAAATAGTTCTGTTCAACCTTGTTCAAATTTACCTGTCCTCTATGATTCT
TCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAACA
GTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAAAT
GATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAAAT
AATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTGAA
GCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATAGA
CCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGTTC
CCAGTGACTTATGTAAAACGTTTATCTGATAATTGATTTATGCCAGTGCAATTATATACA
TGTTCATTTCTACCTTCTTATTTTGATCCTCATCAGCATTTTCATCGAAATCTGTCACTT
TCGTGGAGCTACCATCCGCACCATATTTTATATAATCACACAATATTATTTCC

consensusID : consensus_6445#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [GTCAATACTATTATTATCATTTCATCTTTTCTATTATCTAGCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTGTAAGTAATTAATAGTTTTTGTTTTGTTCAGTTAATAATTGATTATATGCTCACTGCTTCCAACTTCATTTTTGATAAAAATTCATCATAAACTGGTGTAAATAACGCTTTGTTTGATAAATTCCCCTCATTGTTTTACATTAGGTTACCATGCTCATAAAAGAAATGATATTCCAGGGTTTTGAATCTGAGGTGGGTTATACTATATATATGTATANTGTGTGTATATTCAC]

[-] EMBL CD112159             [GTCAATACTATTATTATCATTTCATCTTTTCTATTATCTAGCTTACAGTCAACATTCACCTTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTGTAAGTAATTAATAGTTTTTGTTTTGTTCAGTTAATAATTGATTATATGCTCACTGCTTCCAACTTCATTTTTGATAAAAATTCATCATAAACTGGTGTAAATAACGCTTTGTTTGATAAATTCCCCTCATTGTTTTACATTAGGTTACCATGCTCATAAAAGAAATGATATTCCAGGGTTTTGAATCTGAGGTGGGTTATACTATATATATGTATANTGTGTGTATATTCAC]




>consensus_6445#1
GTCAATACTATTATTATCATTTCATCTTTTCTATTATCTAGCTTACAGTCAACATTCACC
TTCAATTCATTATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCG
TCCACCATCTGTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGG
TGTAAGTAATTAATAGTTTTTGTTTTGTTCAGTTAATAATTGATTATATGCTCACTGCTT
CCAACTTCATTTTTGATAAAAATTCATCATAAACTGGTGTAAATAACGCTTTGTTTGATA
AATTCCCCTCATTGTTTTACATTAGGTTACCATGCTCATAAAAGAAATGATATTCCAGGG
TTTTGAATCTGAGGTGGGTTATACTATATATATGTATANTGTGTGTATATTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6445#0      AATTCCACTGAAAAACAAATAACTTTTGGGGAAAACATAGTTACTAGAGGTAATAATGCC 60
consensus_6445#1      ---------------------------------------GTCAATACTATTATTATCATT 21
                                                             ** * **    ** **     

consensus_6445#0      ACACCACCTGTATCAAATAAACCTACACGATCTTACAGTCAACATTCACCTTCAATTCAT 120
consensus_6445#1      TCATCTTTTCTATTATCTAG-----------CTTACAGTCAACATTCACCTTCAATTCAT 70
                       ** *   * *** *  **            *****************************

consensus_6445#0      TATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCT 180
consensus_6445#1      TATGGTAGTGCACTGGCTACATTACCACGTAAAAAAGGTCCTGCACCTCGTCCACCATCT 130
                      ************************************************************

consensus_6445#0      GTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTTTTTGGAGT 240
consensus_6445#1      GTAGATGATCAAATGAATGTTCGGGGTGGAATGCCAAGTAATAGTACTGGTGT---AAGT 187
                      *************************************************** *    ***

consensus_6445#0      ACCTTCAATCGGTTGGACAATAGTCGTACATCATGTTCCTCGATTGATCATGAGAAATCA 300
consensus_6445#1      AATT--AATAGTTT------TTGTTTTGT-TCA-GTTAAT-AATTGATTATATGC--TCA 234
                      *  *  *** * **      * **  *   *** ***  *  ****** **  *   ***

consensus_6445#0      TTGCCTA-AAGATCATATT-GACATAATCTTGGATGTCTTGGAGGAGAAGCCAATAATTT 358
consensus_6445#1      CTGCTTCCAACTTCATTTTTGATAAAAATTCA----TCATAAACT-GGTGTAAATAACGC 289
                       *** *  **  **** ** ** * **  *      ** *  *   *  *  *****   

consensus_6445#0      CTGAATCCCTCAATACTGCTAATCCTATTACAGTTACTAATAAAACTGGTACAATGTCTT 418
consensus_6445#1      TTTGTTTGATAAATTCCCCTCATTGTTTTACATTAGGTTACCATGCTCATAAAAGA---- 345
                       *   *   * *** *  ** **  * ***** *   * *  *  **  ** **      

consensus_6445#0      CAACGATGAAAAACTCTTGTATTCCTATTACTACTTCCAGTATCAATACATCCCCTGCAA 478
consensus_6445#1      -AATGATATTCCAGGGTTTTGAATCTGAGGTGGGTTATACTATATATATGTATANTGTGT 404
                       ** ***     *   ** *    **        **  * ***  ***  *    **   

consensus_6445#0      TTCCACCTAAGCCAAGTTATTTATCTAATACAATTTATTCAACTTTACCTAATCGAAGTT 538
consensus_6445#1      GTATATTCAC-------------------------------------------------- 414
                       *  *   *                                                   

consensus_6445#0      CACATCTGAATAGAAATAGTTCTGTTCAACCTTGTTCAAATTTACCTGTCCTCTATGATT 598
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      CTTCTTTCACGGAATCATCCCCAGATGCTTCTGTATCAACCAAAGAATTTCAAATATCAA 658
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      CAGTGAATTCACCTAGTCATTTAGTTGATTCCATTAAATTTTCTTTACCACAACATACAA 718
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      ATGATAAATATGATACCAGTCATTATTCACCATCATCATTGAAATGCCATAAAAGCTCAA 778
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      ATAATTTATCAATATTAAACTGTAAAGTAGGTGATCTATTAGAAGCTTTATATGATTGTG 838
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      AAGCTGAAAATTCCGATGAATTGACATTTAATCGTGGAGAAATTATACAATTAATTGATA 898
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      GACCAGATAATGATTGGTGGGAAGGTTTCATTCAATCAGACCCCAGTCGACGTGGAATGT 958
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      TCCCAGTGACTTATGTAAAACGTTTATCTGATAATTGATTTATGCCAGTGCAATTATATA 1018
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      CATGTTCATTTCTACCTTCTTATTTTGATCCTCATCAGCATTTTCATCGAAATCTGTCAC 1078
consensus_6445#1      ------------------------------------------------------------
                                                                                  

consensus_6445#0      TTTCGTGGAGCTACCATCCGCACCATATTTTATATAATCACACAATATTATTTCC 1133
consensus_6445#1      -------------------------------------------------------