These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1189 fasta sequence [AAATTTCCGATGATGAAGCTGAAGACGAAAAGAAAACCGAAAAGAAAGATGATGAAGACAAAAAAGACGAAGCCAAACTCGAAGAAGTTGAAGATGATGATGATGACGACAAGAAAAAAGATACCGACAAAAAGAAAAAGAAGAAAATCAAAGAAAAATACACCGATGAAGAAGAATTGAACAAACAAAAACCGATTTGGACACGAAATCCCGAAGATATTTCAACTGAAGAATACGCCGAATTCTACAAACAATTGACAAACGATTGGGAAGATCATTTGGCTGTGAAACACTTCAGTGTTGAAGGTCAATTGGAATTTCGAGCTCTTCTCTTCATTCCAAAACGTGCTCCATTCGATTTATTCGAAAATCGCAAAACAAAAAATTCGATCAAATTGTACGTTCGACGTGTCTTCATTATGGAAAACTGTGAAGATCTTATGCCCGAATATTTGAACTTTATCAAAGGTGTCGTCGATTCAGAAGATTTACCATTGAACATTTCTCGAGAAATGTTACAACAAAACAAAATTTTGAAAGTTATTCGAAAGAATTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGACAAAGAATCATTTAAGAAATTCTACGAACAATTTTCTCGAAATCTTAAACTCGGTATTCATGAAGATTCAACCAATCGAGCGAAATTGGCATCATATCTTCGTTATCATTCGTCAACATCAGGTGATGAAGTGACATCATTCAAAGATTATGTTTCTCGAATGAAAGAAAATCAAAAAGATATTTATTACATCACCGGAGAATCACGACAAGTCGTCGATCAATCGGCTTTTGTTGAACGTGTTCGTAAACGTGGCTTCGAAATTATCTACATGACCGAACCTATTGACGAATATTGTGTTCAACAATTGAAAGAATTCGAAGGC-AAAAAATCAGTTTCAGTAACGAAAGAAGGTTTAGAATTGCCCGAAGATGAAGAAGAAAAGAAGAAACACGAACAAGACAAAGAAAAATACGAAACACTTTGCAAAGTTATGAAAGATATCCTCGACAAAAAAGTCGAAAAAGTTTTGATCAGCAACCGATTGGTTTCATCACCTTGTTGTATCGTTACATCACAATATGGTTGGTCAGCAACAATGGAACGTATTATGAAAGCTCAAGCTTTACGTGATACATCAACCATGGGTTA] [+] EMBL CD086881 [AAATTTCCGATGATGAAGCTGAAGACGAAAAGAAAACCGAAAAGAAAGATGATGAAGACAAAAAAGACGAAGCCAAACTCGAAGAAGTTGAAGATGATGATGATGACGACAAGAAAAAAGATACCGACAAAAAGAAAAAGAAGAAAATCAAAGAAAAATACACCGATGAAGAAGAATTGAACAAACAAAAACCGATTTGGACACGAAATCCCGAAGATATTTCAACTGAAGAATACGCCGAATTCTACAAACAATTGACAAACGATTGGGAAGATCATTTGGCTGTGAAACACTTCAGTGTTGAAGGTCAATTGGAATTTCGAGCTCTTCTCTTCATTCCAAAACGTGCTCCATTCGATTTATTCGAAAATCGCAAAACAAAAAATTCGATCAAATTGTACGTTCGACGTGTCTTCATTATGGAAAACTGTGAAGATCTTATGCCCGAATATTTGAACTTTATCAAAGGTGTCGTCGATTCAGAAGATTTACCATTGAACATTTCTCGAGAAATGTTACAACAAAACAAAATTTTGAAAGTTATTCGAAAGAATTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGACAAAGAATCATTTAAGA ] [-] EMBL CD135803 [ TCGATTCAGAAGATTTACCATTGAACATTTCTCGAGAAATGTTACAACAAAACANAATTTTGAAAGTTATTCGAAAGAACTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGACAAAGAATCATTTAAGAAATTCTACGAACAATTTTCTCGAAATCTTAAACTCGGTATTCATGAAGATTCAACCAATCGAGCGAAATTGGCATCATATCTTCGTTATCATTCGTCAACATCAGGTGATGAAGTGACATCATTCAAAGATTATGTTTCTCGAATGAAAGAAAATCAAAAAGATATTTATTACATCACCGGAGAATCACGACAAGTCGTCGATCAATCGGCTTTTGTTGAACGTGTTCGTAAACGTGGCTTCGAAATTATCTACATGACCGAACCTATTGACGAATATTGTGTTCAACAATTGAAAGAATTCGAAGGC AAAAAATCAGTTTCAGTAACGAAAGAAGGTTTAGAATTGCC ] [+] EMBL CD131456 [ ATTATCTACATGACCGAACCTATTGACGAATATTGTGTTCAACAATTGAAAGAATTCGAAGGCAAAAAAATTAGTTTCAGTAACGAAAGAAGGTTTAGAATTGCCCGAAGATGAAGAAGAAAAGAAGAAACACGAACAAGACAAAGAAAAATACGAAACACTTTGCAAAGTTATGAAAGATATCCTCGACAAAAAAGTCGAAAAAGTTTTGATCAGCAACCGATTGGTTTCATCACCTTGTTGTATCGTTACATCACAATATGGTTGGTCAGCAACAATGGAACGTATTATGAAAGCTCAAGCTTTACGTGATACATCAACCATGGGTTA] consensusID : consensus_6449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [AAGTTTTGATCAGTAATCGATTAGTTTCATCACCGTGTTGTATTGTTACATCACAATACGGTTGGTCAGCAACAATGGAACGAATTATGAAAGCACAAGCGTTACGTGACTCATCGACGATGGGTTATATGGCCGCTAAGAAACATTTGGAAATCAATCCGGATCATTCGATCGTAAAAACATTGAAAAACAAAGTTGATCAAGATAAAAATGATAAATCTGTCAAAGATTTAGTTACACTTCTCTATGAAACGTCACTTTTGGCCAGTGGTTTTACACTTGAATTGCCTCAACAACATGCCGATCGAATCTTTCGTATGATTAAACTCGGTTTAGGTATCGATGAAGAAAATGCAACAGGTGAAGATCGAATGGCGACTGGAGAATCGGGTTCCGATCTGCCACCATTGGAAAGCACAGGTGAAAATTCTGCTTCCGTCTCTGC] [+] EMBL CD090576 [AAGTTTTGATCAGTAATCGATTAGTTTCATCACCGTGTTGTATTGTTACATCACAATACGGTTGGTCAGCAACAATGGAACGAATTATGAAAGCACAAGCGTTACGTGACTCATCGACGATGGGTTATATGGCCGCTAAGAAACATTTGGAAATCAATCCGGATCATTCGATCGTAAAAACATTGAAAAACAAAGTTGATCAAGATAAAAATGATAAATCTGTCAAAGATTTAGTTACACTTCTCTATGAAACGTCACTTTTGGCCAGTGGTTTTACACTTGAATTGCCTCAACAACATGCCGATCGAATCTTTCGTATGATTAAACTCGGTTTAGGTATCGATGAAGAAAATGCAACAGGTGAAGATCGAATGGCGACTGGAGAATCGGGTTCCGATCTGCCACCATTGGAAAGCACAGGTGAAAATTCTGCTTCCGTCTCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6449#0 AAATTTCCGATGATGAAGCTGAAGACGAAAAGAAAACCGAAAAGAAAGATGATGAAGACA 60 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 AAAAAGACGAAGCCAAACTCGAAGAAGTTGAAGATGATGATGATGACGACAAGAAAAAAG 120 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 ATACCGACAAAAAGAAAAAGAAGAAAATCAAAGAAAAATACACCGATGAAGAAGAATTGA 180 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 ACAAACAAAAACCGATTTGGACACGAAATCCCGAAGATATTTCAACTGAAGAATACGCCG 240 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 AATTCTACAAACAATTGACAAACGATTGGGAAGATCATTTGGCTGTGAAACACTTCAGTG 300 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 TTGAAGGTCAATTGGAATTTCGAGCTCTTCTCTTCATTCCAAAACGTGCTCCATTCGATT 360 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 TATTCGAAAATCGCAAAACAAAAAATTCGATCAAATTGTACGTTCGACGTGTCTTCATTA 420 consensus_6449#1 ---------------------AAGTTTTGATCAG--TAATCGATTA--GTTTCATCACCG 35 ** ** ***** * ** * ** ** *** consensus_6449#0 TGGAAAACTGTGAAGATCTTATGCCCGAATATTTGAACTTTATCAAAGGTGTCGTCGATT 480 consensus_6449#1 TGTTGTATTGTTACATCACAATA--CGGTTGGTCAGCAACAATGGAACGAATTATGAAAG 93 ** * *** * ** ** * * ** ** * * * * consensus_6449#0 CAGAAGATTTACCATTGAACATTTCT--CGAGAAATGTTACAACAAAACAAAATTTTGAA 538 consensus_6449#1 CACAAGCGTTAC-GTGACTCATCGACGATGGGTTATATGGCCGCTAAGAAACATTTGGAA 152 ** *** **** * *** * * ** * * * ** ** **** *** consensus_6449#0 AGTTATTCGAAAGAATTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGA 598 consensus_6449#1 ATCAATCCGGATCATTCGATCGTAAAAACATTGAAAAACAAA-GTTGATCAAGATAAAAA 211 * ** ** * * * * * * *** * ** ** * ** * * ** * consensus_6449#0 CAAAGAATCATTTAAGAAATTCTACGAACAATTTTCT-CGAAATCTTAAACTCGGTATTC 657 consensus_6449#1 TGATAAATCTGTCAAAGA--TTTAGTTACACTTCTCTATGAAACGTCACTTTTGG----C 265 * **** * ** * * ** *** ** *** **** * * * ** * consensus_6449#0 ATGAAGATTCAACCAATCGAGCGAAATTGGCATCATATCTTCGTTATCATTCGTCAACAT 717 consensus_6449#1 CAGTGGTTTTA--CACTTGAATTGCCTCAACAACATGCCGATCGAATCTTTCGT------ 317 * * ** * ** * ** * ** *** * *** ***** consensus_6449#0 CAGGTGATGAAGTGACATCATTCAAAGATTATGTTTCTCGAATGAAAGAAAATCAAAAAG 777 consensus_6449#1 ---ATGATTAA--------ACTC--GGTTTAGGTATCGATGAAGAAAATGCAACAGGTGA 364 **** ** * ** * *** ** ** * **** * ** consensus_6449#0 ATATTTATTACATCACCGGAGAATCACGACAAGTCGTCGATCAATCGGCTTTTGTTGAAC 837 consensus_6449#1 AGATCGAATG-GCGACTGGAGAATCGGGTT------CCGATCTGCCA-CCATTGGAAAGC 416 * ** * * ** ******** * ***** * * *** * * consensus_6449#0 GTGTTCGTAAACGTGGCTTCGAAATTATCTACATGACCGAACCTATTGACGAATATTGTG 897 consensus_6449#1 ACAGGTGAAAATTCTGCTTCCG---TCTCTGC---------------------------- 445 * *** ***** * *** * consensus_6449#0 TTCAACAATTGAAAGAATTCGAAGGCAAAAAATCAGTTTCAGTAACGAAAGAAGGTTTAG 957 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 AATTGCCCGAAGATGAAGAAGAAAAGAAGAAACACGAACAAGACAAAGAAAAATACGAAA 1017 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 CACTTTGCAAAGTTATGAAAGATATCCTCGACAAAAAAGTCGAAAAAGTTTTGATCAGCA 1077 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 ACCGATTGGTTTCATCACCTTGTTGTATCGTTACATCACAATATGGTTGGTCAGCAACAA 1137 consensus_6449#1 ------------------------------------------------------------ consensus_6449#0 TGGAACGTATTATGAAAGCTCAAGCTTTACGTGATACATCAACCATGGGTTA 1189 consensus_6449#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||