|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 791 fasta sequence
[TTTGCATCGTTTAATAATAATAATTGATTTGCTTCTAACTGCTGTTGTTGTTGCTGCTGCTGAACAGCTAATAAATTTCCTGGGGATAAATATGACTGCATAGAAGGTGGGATGGTTGAACCAGGTCGTGATGTACGACCATATGTGCCGAAACCTTGAAGATATGATCCATTTGATAGAGTATGACCATTTATTGTGGGATTTTGCATTAAATTGTTGGCAGCCACAGCAGCAGCTAGAA------GTTGTTGTTGTTGTTACTGCTGACGTAATTGTTGTTCCACCAAACCAACTTGATGTTGAGCTATTAGTTTAGCTTGTTGTAATTGAAGTAGTTTATTAGTCTCAGAATTCAATAAAGCAGGACTGAGCATATAAGAGTTGGTTAGATTATTCTGATTGACACCTGATAAAACTTGTGGAAATCCACCGGCTGCTGCAACAGCTGCTGCTAAAGCCTGTTGTTGTTGTGAATTATGCAGCTGTAATGCGAATGGATTGATTAAACCAGTAGCTGCATTTGGTCCAATAAATTCTAATTCAGATATCAACGAACCAGAGAGTGGTGTAGCAGGAGGGAGTTCCGATGGTGGATGATTTGCTTATACTGGCTGCTNCATTCANTTCTGAATTCANTAGATNCACAGATGGAGAGCCGGGTAAATTCAATGGTGGCATTTGTACATTTGCATCGTTAAATAATAATAAATGATTTGCTTCCAACTGCTNGTGTTGTTGCTGCTGCTGAACAACTAATAAATTTCTGGGGATAAATATGACTGCATANAGGGTGG]
[-] EMBL CD202170 [TTTGCATCGTTTAATAATAATAATTGATTTGCTTCTAACTGCTGTTGTTGTTGCTGCTGCTGAACAGCTAATAAATTTCCTGGGGATAAATATGACTGCATAGAAGGTGGGATGGTTGAACCAGGTCGTGATGTACGACCATATGTGCCGAAACCTTGAAGATATGATCCATTTGATAGAGTATGACCATTTATTGTGGGATTTTGCATTAAATTGTTGGCAGCCACAGCAGCAGCTAGAA GTTGTTGTTGTTGTTACTGCTGACGTAATTGTTGTTCCACCAAACCAACTTGATGTTGAGCTATTAGTTTAGCTTGTTGTAATTGAAGTAGTTTATTAGTCTCAGAATTCAATAAAGCAGGACTGAGCATATAAGAGTTGGTTAGATTATTCTGATTGACACCTGATAAAACTTGTGGAAATCCAC ]
[+] EMBL CD188696 [ TGACTGCATAGAAGGTGGGATGGTTGAACCAGGTCGTGATGTACGACCATATGTGCCGAAACCTTGAAGATATGATCCATTTGATAGAGTATGACCATTTATTGTGGGATTTTGCATTAAATTGTTGGCAGCCACAGCAGCAGCTAGAAGTTGTTGTTGTTGTTGTTGTTGCTGCTGACGTAATTGTTGTTCCACCAAACCAACTTGATGTTGAGCTATTAGTTTAGCTTGTTGTAATTGAAGTAGTTTATTAGTCTCAGAATTCAATAAAGCAGGACTGAGCATATAAGAGTTGGTTAGATTATTCTGATTGACACCTGATAAAACTTGTGGAAATCCACCGGCTGCTGCAACAGCTGCTGCTAAAGCCTGTTGTTGTTGTGAATTATGCAGCTGTAATGCGAATGGATTGATTAAACCAGTAGCTGCATTTGGTCCAATAAATTCTAATTCAGATATCAACGAACCAGAGAGTGGTGTAGCAGGAGGGAGTTCCGATGGTGGATGATTTGCTTATACTGGCTGCTNCATTCANTTCTGAATTCANTAGATNCACAGATGGAGAGCCGGGTAAATTCAATGGTGGCATTTGTACATTTGCATCGTTAAATAATAATAAATGATTTGCTTCCAACTGCTNGTGTTGTTGCTGCTGCTGAACAACTAATAAATTTCTGGGGATAAATATGACTGCATANAGGGTGG]
consensusID : consensus_6454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 328 fasta sequence
[TAATTCAGATATCAACGAACCAGAGAGTGGTGTAGCAGGAGGAGGTTCCGATGGCGGAGGTGGAATAATACCAGCACGAATAGAATGAGCAAGTCTACATGCTGATCTTAGAGTCCCATGTGGATCAACACCACTGATTGTGGTAGCCCGAGTTAGACTCCCTGTAATACGCTGTCTACGAGGTAATGTGCCTCCTGAAGAACCATAGGCTGTCGATCGTGTATACCGACCTAGAGATGAGTCTCTCTGACGGGTGTTTAGTTGATACGTTTGGCGGCGGTGCCTACCACGAATGCCTACGTCGAAGTCATTGCCAGTATGAAATCCA]
[+] EMBL CD179887 [TAATTCAGATATCAACGAACCAGAGAGTGGTGTAGCAGGAGGAGGTTCCGATGGCGGAGGTGGAATAATACCAGCACGAATAGAATGAGCAAGTCTACATGCTGATCTTAGAGTCCCATGTGGATCAACACCACTGATTGTGGTAGCCCGAGTTAGACTCCCTGTAATACGCTGTCTACGAGGTAATGTGCCTCCTGAAGAACCATAGGCTGTCGATCGTGTATACCGACCTAGAGATGAGTCTCTCTGACGGGTGTTTAGTTGATACGTTTGGCGGCGGTGCCTACCACGAATGCCTACGTCGAAGTCATTGCCAGTATGAAATCCA]
[+] EMBL CD168936 [ AGGAGGTTCCGATGGTGGAGGTGGAATAATACCAGCACGAATAGAATGAGCAAGTCTACACGCTGATCTTAGAGTCCCATGTGGATCAACACCACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6454#0 TTTGCATCGTTTAATAATAATAATTGATTTGCTTCTAACTGCTGTTGTTGTTGCTGCTGC 60
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 TGAACAGCTAATAAATTTCCTGGGGATAAATATGACTGCATAGAAGGTGGGATGGTTGAA 120
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 CCAGGTCGTGATGTACGACCATATGTGCCGAAACCTTGAAGATATGATCCATTTGATAGA 180
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 GTATGACCATTTATTGTGGGATTTTGCATTAAATTGTTGGCAGCCACAGCAGCAGCTAGA 240
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 AGTTGTTGTTGTTGTTACTGCTGACGTAATTGTTGTTCCACCAAACCAACTT-GATGTTG 299
consensus_6454#1 ----------------------------------------------TAATTCAGATATCA 14
** * *** *
consensus_6454#0 AGCTATTAGTTTAGCTTGTTGTAATTGAAGTAGTTTATTAGTCTCAGAATTCAATAAAGC 359
consensus_6454#1 ACGAACCAG---AGAGTGGTGTAGCAGGAGGAGGTTCCGATGGCGGAGGTGGAATAATAC 71
* * ** ** ** **** * ** ** ** * * ***** *
consensus_6454#0 AGGACTGAGCATATAAGAGTTGGTTAGATTATTCTGATTGACACCTGATAAAACTTGTGG 419
consensus_6454#1 CAGCACGAATAGA-ATGAGCAAGTCTA--CATGCTGAT-----CTTAGAGTCCCATGTGG 123
* ** * * * *** ** ** ***** * * * *****
consensus_6454#0 AAATCCACCGGCTGCTGCAACAGCTGCTGCTAAAGCCTGTTGTTGTTGTGAATTATGCA- 478
consensus_6454#1 ATCAACACCACTGATTGTGGTAGCCCGAGTTAGACTCC----CTGTAATACGCTGTCTAC 179
* **** ** *** * ** * * *** * * * *
consensus_6454#0 GCTGTAATGCGAATGGATTGATTAAACCAGTAGCTGCATTTGGTCCAATAAATTCTAATT 538
consensus_6454#1 GAGGTAATGTGCCT--CCTGAA-GAACCATAGGCTG---TCGATC--GTGTATACCGACC 231
* ****** * * *** ***** **** * * ** * ** * *
consensus_6454#0 CAGATATCAACGAACCAGAGAGTGGTGTAGCAGGAGGGAGTTCCGATGGTGGATGATTTG 598
consensus_6454#1 TAGAGATGAGTCTCTCTGACGGGTGTTTAGTTGATACGTTTGGCGGCGGTGCCTA--CCA 289
*** ** * * ** * ** *** * * * ** **** *
consensus_6454#0 CTTATACTGGCTGCTNCATTCANTTCTGAATTCANTAGATNCACAGATGGAGAGCCGGGT 658
consensus_6454#1 CGAATGCCTAC-GTCGAAGTCATTGCCAG---TATGAAATCCA----------------- 328
* ** * * * * *** * * * * ** **
consensus_6454#0 AAATTCAATGGTGGCATTTGTACATTTGCATCGTTAAATAATAATAAATGATTTGCTTCC 718
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 AACTGCTNGTGTTGTTGCTGCTGCTGAACAACTAATAAATTTCTGGGGATAAATATGACT 778
consensus_6454#1 ------------------------------------------------------------
consensus_6454#0 GCATANAGGGTGG 791
consensus_6454#1 -------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||