cluster # 646

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Schistosoma mansoni
cluster # 646 cluster # 646 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_646#0 length = 595 sequences # 1

consensus_646#1 length = 461 sequences # 1

consensusID : consensus_646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [TTATTCCACTTACATTCTACTTGTATCTGTAAACATGAATAGCATACACCATATCCTATAATCAACTACTTCATAGTTTAATAACTATCAACTTGTATAAAGTCTTGAGTGGTCTTGCGTGCTGTTAAAGGGAAGAGGGCAGTTATCACTTCCCCGTTGTCCACAACGTGAAAGGGTTCTTCTAGAGGTACGTGAAAAGGAAATTGGGTTAGAAGTGGTCTCAATGATATGAGAGCGTGACCGCAGTTCTCAAGGGGCAACTGCTTGAGGTCGGTCACACACGACCTTTTTGTGTTAGCTCTGTACTTGTTGGGACCTTACCGCCGGAGACGGATATTCGTGGGATAAGGTGAGGTGAGCATTTTTAGGGTCAACCTTTTCTAACCCCACGCCACCTTGTGGGAAGGCAGCATCTCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGNGTTTGCTGCTTTTAGTCTTACCGCACTTCAACCGACCTGCCTGGCACGGTAGGACCTTGNAGAACGATTGTTCCTGCCAGTATAGCTCGACCAC]

[+] EMBL CD092929             [TTATTCCACTTACATTCTACTTGTATCTGTAAACATGAATAGCATACACCATATCCTATAATCAACTACTTCATAGTTTAATAACTATCAACTTGTATAAAGTCTTGAGTGGTCTTGCGTGCTGTTAAAGGGAAGAGGGCAGTTATCACTTCCCCGTTGTCCACAACGTGAAAGGGTTCTTCTAGAGGTACGTGAAAAGGAAATTGGGTTAGAAGTGGTCTCAATGATATGAGAGCGTGACCGCAGTTCTCAAGGGGCAACTGCTTGAGGTCGGTCACACACGACCTTTTTGTGTTAGCTCTGTACTTGTTGGGACCTTACCGCCGGAGACGGATATTCGTGGGATAAGGTGAGGTGAGCATTTTTAGGGTCAACCTTTTCTAACCCCACGCCACCTTGTGGGAAGGCAGCATCTCTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGNGTTTGCTGCTTTTAGTCTTACCGCACTTCAACCGACCTGCCTGGCACGGTAGGACCTTGNAGAACGATTGTTCCTGCCAGTATAGCTCGACCAC]




>consensus_646#0
TTATTCCACTTACATTCTACTTGTATCTGTAAACATGAATAGCATACACCATATCCTATA
ATCAACTACTTCATAGTTTAATAACTATCAACTTGTATAAAGTCTTGAGTGGTCTTGCGT
GCTGTTAAAGGGAAGAGGGCAGTTATCACTTCCCCGTTGTCCACAACGTGAAAGGGTTCT
TCTAGAGGTACGTGAAAAGGAAATTGGGTTAGAAGTGGTCTCAATGATATGAGAGCGTGA
CCGCAGTTCTCAAGGGGCAACTGCTTGAGGTCGGTCACACACGACCTTTTTGTGTTAGCT
CTGTACTTGTTGGGACCTTACCGCCGGAGACGGATATTCGTGGGATAAGGTGAGGTGAGC
ATTTTTAGGGTCAACCTTTTCTAACCCCACGCCACCTTGTGGGAAGGCAGCATCTCTGTT
ATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGCAGTAC
GACTTCGCCTTCGGACCTTGNGTTTGCTGCTTTTAGTCTTACCGCACTTCAACCGACCTG
CCTGGCACGGTAGGACCTTGNAGAACGATTGTTCCTGCCAGTATAGCTCGACCAC

consensusID : consensus_646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [ATTATGTCGGGAAATAGAAACAGATATGAAAAAAATGAATGTTAATTGGAAAGAACTGAAAAGGACTGTCCAGGACAGGGTTGGATAGAGAATGTTGATGTAAGTAAGTAAGACCCATAATTTTGTAACATTGAAAAGAGTTAGCTCCATGTATTGTGTTGTTTGTCGTAAAACAAAAACAAAACAAAGAGTATGTAGAACACAATAAAAATAAATAAACCTCACCTTTAATACAGTTAATGGAAAATTATAGACAAGACAAAGTAAACCTAATGCTCGACCAGCATTAGATTTAGCTTCAACTGTTAAATTATTATTATTTAAAATATCCCAAAATCCACACTTGATCATCATCAAAAATCGTCGATGACAATTTAGAATACCACCTAATACACGTGGATAAAAACGATTGACAGGCATTTCAGACATAACACAATGCAATAAAATATGAATCATTTCCC]

[+] EMBL CD145242             [ATTATGTCGGGAAATAGAAACAGATATGAAAAAAATGAATGTTAATTGGAAAGAACTGAAAAGGACTGTCCAGGACAGGGTTGGATAGAGAATGTTGATGTAAGTAAGTAAGACCCATAATTTTGTAACATTGAAAAGAGTTAGCTCCATGTATTGTGTTGTTTGTCGTAAAACAAAAACAAAACAAAGAGTATGTAGAACACAATAAAAATAAATAAACCTCACCTTTAATACAGTTAATGGAAAATTATAGACAAGACAAAGTAAACCTAATGCTCGACCAGCATTAGATTTAGCTTCAACTGTTAAATTATTATTATTTAAAATATCCCAAAATCCACACTTGATCATCATCAAAAATCGTCGATGACAATTTAGAATACCACCTAATACACGTGGATAAAAACGATTGACAGGCATTTCAGACATAACACAATGCAATAAAATATGAATCATTTCCC]




>consensus_646#1
ATTATGTCGGGAAATAGAAACAGATATGAAAAAAATGAATGTTAATTGGAAAGAACTGAA
AAGGACTGTCCAGGACAGGGTTGGATAGAGAATGTTGATGTAAGTAAGTAAGACCCATAA
TTTTGTAACATTGAAAAGAGTTAGCTCCATGTATTGTGTTGTTTGTCGTAAAACAAAAAC
AAAACAAAGAGTATGTAGAACACAATAAAAATAAATAAACCTCACCTTTAATACAGTTAA
TGGAAAATTATAGACAAGACAAAGTAAACCTAATGCTCGACCAGCATTAGATTTAGCTTC
AACTGTTAAATTATTATTATTTAAAATATCCCAAAATCCACACTTGATCATCATCAAAAA
TCGTCGATGACAATTTAGAATACCACCTAATACACGTGGATAAAAACGATTGACAGGCAT
TTCAGACATAACACAATGCAATAAAATATGAATCATTTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_646#0      TTATTCCACTTACATTCTACTTGTATCTGTAAACATGAATAGCATACACCATATCCTATA 60
consensus_646#1      ------------------------------------------------------------
                                                                                 

consensus_646#0      ATCAACTACTTCATAGTTTAATAACTATCAACTTGTATAAAGTCTTGAGTGGTCTTGCGT 120
consensus_646#1      ---------------------------------------------------ATTATGTCG 9
                                                                         *  **   

consensus_646#0      GCTGTTAAAGGGAAGAGGGCAGTTATCACTTCCCCGTTGTCCACAACGTGAAAGGGTTCT 180
consensus_646#1      GGAAATAGAAACAGATATGAAAAAAATGAATGTTAATTGGAAAGAACTGAAAAGGACTGT 69
                     *    ** *   *     * *   *     *     ***   * ***   *****  * *

consensus_646#0      TCTAGAGGTACGTGAAAAGGAAATTGGGTTAGAAGTGGTCTCAATGATATGAGAGCGTGA 240
consensus_646#1      CCAGGACAGGGTTGGATAGAGAATGTTGATGTAAGTAAG-TAAGACCCATAATTTTGTAA 128
                      *  **      ** * **  ***   * *  ****    * *     ** *    ** *

consensus_646#0      CCGCAGTTCTCAAGGGGCAACTGCTTGAGGTCGGTCACACACGACCTTTTTGTGTTAGCT 300
consensus_646#1      C----ATTGAAAAGAGTTAGCTCCATGTATTGTGTTGTTTGTCGTAAAACAAAAACAAAA 184
                     *     **   *** *  * ** * **   *  **                     *   

consensus_646#0      CTGTACTTGT-TGGGACCTTACCGCCGGAGACGGATATT-CGTGGGATAAGGTGAGGTGA 358
consensus_646#1      CAAAGAGTATGTAGAACACAATAAAAATAAATAAACCTCACCTTTAATACAGTTAATGGA 244
                     *      * * * * **   *       * *   *  *  * *   ***  ** *   **

consensus_646#0      GCATTTT---TAGGGTCAACCTTTTCTAACCCCACGCCACCTTGTGGGAAGGCAGCATCT 415
consensus_646#1      AAATTATAGACAAGACAAAGTAAACCTAATGCTCGACCAGCATTAGATTTAGCTTCAACT 304
                       *** *    * *   **      ****  *    *** * *  *     **  ** **

consensus_646#0      CTGTTATGCTGGTTGTCTGAAGGAAACACCTTACTGCTGTCACACCTCTGTACAGTCAGC 475
consensus_646#1      GTTAAATTATTATTATTTAAA----ATATCCCAAAATC--CACACTTGATCATCATCAAA 358
                      *   **  *  ** * * **    * * *  *       ***** *    *   ***  

consensus_646#0      AGTA--CGACTTCGCCTTCGGACCTTGNGTTTGCTGCTTTTAGTCTTACCGCACTTCAAC 533
consensus_646#1      AATCGTCGATGACAATTTAGAATACCAC--CTAATACACGTGGA-TAAAAACGATT-GAC 414
                     * *   ***   *   ** * *         *  * *   * *  * *   *  **  **

consensus_646#0      CGACCTGCCTGGCACGGTAGGACCTTGNAGAACGATTGTTCCTGCCAGTATAGCTCGACC 593
consensus_646#1      AGGCATTTCAGACATAACACAATGCAATAAAATATGAATCATTTCCC------------- 461
                      * * *  * * **    *  *      * **      *   * **              

consensus_646#0      AC 595
consensus_646#1      --