cluster # 6460

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Schistosoma mansoni
cluster # 6460 cluster # 6460 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6460#0 length = 535 sequences # 3

consensus_6460#1 length = 323 sequences # 1

consensusID : consensus_6460#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 535
fasta sequence

                              [CTTGTACTACCAAGAAGTTCGAGAAAGCTGTTATCAGGAGACCTTCCAAGACCAAGGACCACACCCAAATCAGGCTCAGCAGTAGATAGAAGACAAACAGAATTGGAGCCACTTATGTTTGCATCATTGGTGGCCGCCACGGAACAGGATATAGCCTGTGTAGTTAACAAAGTGGATAACGTTTGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCAGGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAACTGAAAATGTTTTTGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATG]

[+] EMBL CD111165             [CTTGTACTACCAAGAAGTTCGAGAAAGCTGTTATCAGGAGACCTTCCAAGACCAAGGACCACACCCAAATCAGGCTCAGCAGTAGATAGAAGACAAACAGAATTGGAGCCACTTATGTTTGCATCATTGGTGGCCGCCACGGAACAGGATATAGCCTGTGTAGTTAACAAAGTGGATAACGTTTGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAAAGATTAATAACACGAGCTCGAACAATATCACCTGGTCT                                                                                                                                                                                                                                                                 ]
[-] EMBL CD125806             [                                                                                                                                                         GCCTGTGTAGTTAACAAAGTGGATAACGTTGGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGC                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD065323             [                                                                                                                                                                                                                   aatTGTAGGTATACGCTCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCAGGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAACTGAAAATGTTTTTGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATG]




>consensus_6460#0
CTTGTACTACCAAGAAGTTCGAGAAAGCTGTTATCAGGAGACCTTCCAAGACCAAGGACC
ACACCCAAATCAGGCTCAGCAGTAGATAGAAGACAAACAGAATTGGAGCCACTTATGTTT
GCATCATTGGTGGCCGCCACGGAACAGGATATAGCCTGTGTAGTTAACAAAGTGGATAAC
GTTTGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAG
AGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCC
TGATCGCGCTGCGTAGCAGGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCA
AGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAA
ACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCA
ACTGAAAATGTTTTTGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATG

consensusID : consensus_6460#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [ACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCACGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAATGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATGCGCTTGAAAG]

[-] EMBL CD170708             [ACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCACGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCAATGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATGCGCTTGAAAG]




>consensus_6460#1
ACCAGTGTTGGTATACGATCCAGGACCCAAGAGATTAATAACACGAGCTCGAACAATATC
ACCTGGTCTAAAACAGCAGCCTGGTTCTGCCTGATCGCGCTGCGTAGCACGAATATCCTC
ACGTCTTATGAGACCTTTGAATGGTCCGGCAAGGTAAACTTCTCCAATCGCGACGATATC
GCAGCGAACGAATCGTCGTGTGATACTGGAAACTTTGGCTAACACAATTGACCCGGTGTA
AGGAACTATGCCAGGAGTTTTCAATGGTGCAATGTTCCGTCCGTATGGGATTCCTCTTTG
ACATATCCAAATGCGCTTGAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6460#0      CTTGTACTACCAAGAAGTTCGAGAAAGCTGTTATCAGGAGACCTTCCAAGACCAAGGACC 60
consensus_6460#1      ------------------------------------------------------------
                                                                                  

consensus_6460#0      ACACCCAAATCAGGCTCAGCAGTAGATAGAAGACAAACAGAATTGGAGCCACTTATGTTT 120
consensus_6460#1      ------------------------------------------------------------
                                                                                  

consensus_6460#0      GCATCATTGGTGGCCGCCACGGAACAGGATATAGCCTGTGTAGTTAACAAAGTGGATAAC 180
consensus_6460#1      ------------------------------------------------------------
                                                                                  

consensus_6460#0      GTTTGTGGTGAAGTGCTAGACATAAGTGAACCAGTGTTGGTATACGATCCAGGACCCAAG 240
consensus_6460#1      -----------------------------ACCAGTGTTGGTATACGATCCAGGACCCAAG 31
                                                   *******************************

consensus_6460#0      AGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCC 300
consensus_6460#1      AGATTAATAACACGAGCTCGAACAATATCACCTGGTCTAAAACAGCAGCCTGGTTCTGCC 91
                      ************************************************************

consensus_6460#0      TGATCGCGCTGCGTAGCAGGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCA 360
consensus_6460#1      TGATCGCGCTGCGTAGCACGAATATCCTCACGTCTTATGAGACCTTTGAATGGTCCGGCA 151
                      ****************** *****************************************

consensus_6460#0      AGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAA 420
consensus_6460#1      AGGTAAACTTCTCCAATCGCGACGATATCGCAGCGAACGAATCGTCGTGTGATACTGGAA 211
                      ************************************************************

consensus_6460#0      ACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCA 480
consensus_6460#1      ACTTTGGCTAACACAATTGACCCGGTGTAAGGAACTATGCCAGGAGTTTTCAATGGTGCA 271
                      ************************************************************

consensus_6460#0      ACTGAAAATGTTTTTGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATG----- 535
consensus_6460#1      A-------------TGTTCCGTCCGTATGGGATTCCTCTTTGACATATCCAAATGCGCTT 318
                      *             *****************************************     

consensus_6460#0      -----
consensus_6460#1      GAAAG 323