These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [TCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACCCAGTCATATGCTCTTGTATTTTATAAAATGCTTGAATATAATGATTTATCTGATGATGTAAACATGTCCATTTATCCTCGAAATGCTGATCAAATTCGAATACATCATTTAAATGAATATAACTGGAAGCGTAATTCAAACAACGATAGTTCATTATCCTTTGAAGATAATTTATTTGAAATCACATACAATGGAACTAGTCCAAAAATGACTTCACCATATGAGCAAGTTATTATTAAGTTTCGAATAAGCAATACAACTCAACATCATAAAGATATGCCACATTTATTATTTAAACCTGGTTGGATTGTTCAATTTGATGTTTTATTTAATAATTTAACTAGTCATTTTAATCAAAGTCGATTTGGTTTACAATTAATGATGATGTCGAATTT] [+] EMBL CD197398 [TCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACCCAGTCATATGCTCTTGTATTTTATAAAATGCTTGAATATAATGATTTATCTGATGATGTAAACATGTCCATTTATCCTCGAAATGCTGATCAAATTCGAATACATCATTTAAATGAATATAACTGGAAGCGTAATTCAAACAACGATAGTTCATTATCCTTTGAAGATAATTTATTTGAAATCACATACAATGGAACTAGTCCAAAAATGACTTCACCATATGAGCAAGTTATTATTAAGTTTCGAATAAGCAATACAACTCAACATCATAAAGATATGCCACATTTATTATTTAAACCTGGTTGGATTGTTCAATTTGATGTTTTATTTAATAATTTAACTAGTCATTTTAATCAAAGTCGATTTGGTTTACAATTAATGATGATGTCGAATTT] consensusID : consensus_6470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 352 fasta sequence [GAGCAACCTTGTCTATCATACTAGTCGTACTAGCGTGTCATCAACCATGTCAAATTTTATCATTGTGATCTGTATATTTGCTTTTACTTATGTTGGGGAAGGTTCTTGGAATGTTACTATAAATCACAATCCAAATTGTAATCTTTCGAAAGAATGTGACAAATATGATGTGATATACATTAATGGACGTAATTTAACATCTTCAGTACATGTGCTTATAACAGCATCAGAACGCTTTTCTCTCCCATCAATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCATTTAAATGTTTCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACC] [+] EMBL CD195792 [GAGCAACCTTGTCTATCATACTAGTCGTACTAGCGTGTCATCAACCATGTCAAATTTTATCATTGTGATCTGTATATTTGCTTTTACTTATGTTGGGGAAGGTTCTTGGAATGTTACTATAAATCACAATCCAAATTGTAATCTTTCGAAAGAATGTG ] [+] EMBL CD196891 [ gacggtTCATACTAGTCGTACTAGCGTGTCATCAACCATGTCAAATTTTATCATTGTGATCTGTATATTTGCTTTTACTTATGTTGTAGAAGGTTCTTGGAATGTTACTATAAATCACAATCCAAATTGTAATCTTTCGAAAGAATGTGACAAATATGATGTGATATACATTAATGGACGTAATTTAACATCTTCAGTACATGTGCTTATAACAGCATCAGAACGCTTTTCTCTCCCATCAATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCATTTAAATGTTTCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACC] [+] EMBL CD195746 [ TTTCGAAAGAATGTGACAAATATGATGTGATATACATTAATGGACGTAATTTAACATCTTCAGTACATGTGTTTATAACAGCATCAGAACGCTTTTCTCTCCCATCAATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCATTTAAATGTTTCTTCTGGAAAAAGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6470#0 TCTTCTGGAAAAAGATTAACTGTCGGTAATGTGACCCAGTCATATGCTCTTGTATTTTAT 60 consensus_6470#1 ------------------------------------GAGCAACCTTGTCTATCATACTA- 23 ** * * *** ** ** consensus_6470#0 AAAATGCTTGAATATAATGATTTATCTGATGATGTAAACATGTCCATTTATCCTCGAAAT 120 consensus_6470#1 GTCGTACTAGCGTGTCATCAACCATGTCA-AATTTTATCATTGTGATCTGTATATTTGCT 82 * ** * * * ** * ** * * ** * * *** ** * * * consensus_6470#0 GCTGATCAAATTCGAATACATCATTTAAATGAATATAACTGGAAGCGTAATTCAAACAAC 180 consensus_6470#1 TTTACTTATGTTGGGGAAGGTTCTTGGAATG---TTACTATAAATCACAATCCAAATTGT 139 * * * ** * * * ** **** ** ** * *** **** consensus_6470#0 GATAGTTCATTATCCTTTGAAGATAATTTATTTGAAATCACATACAATGGAACTAGTCCA 240 consensus_6470#1 AATCTTTCGAAAGAATGTGACAAATATG-ATGTGATAT-ACAT-TAATGGACGTAATTT- 195 ** *** * * *** * ** ** *** ** **** ****** ** * consensus_6470#0 AAAATGACTTCACCATATGAGCAAGTTATTATTAAGTTTCGAATAAGCAATACAACTCAA 300 consensus_6470#1 --AACATCTTCAGTACATGTGC---TTATAAC--AGCATCAGAACGCTTTTCTCTCCCAT 248 ** ***** * *** ** **** * ** ** * * * ** consensus_6470#0 CATCATAAAGATATGCCACA-TTTATTATTTAAACCTGGTTGGATTGTTCAATTTGATGT 359 consensus_6470#1 CA--ATTTTGATCATTCACAGTTCATCAGCTGAAGCTAATCCTGTAATAGAATGGGATCA 306 ** ** *** **** ** ** * * ** ** * * * *** *** consensus_6470#0 TTTATTTAATAATTTAACTAGTCATTTTAATCAAAGTCGATTTGGTTTACAATTAATGAT 419 consensus_6470#1 TTTAAATGTTTCTTCTGGAAAA-AGATTAACTGTCGGTAATGTGACC------------- 352 **** * * ** * * **** * ** ** consensus_6470#0 GATGTCGAATTT 431 consensus_6470#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||