These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 571 fasta sequence [GTGAATTCCTAGATATGAAGCGATGCAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGATGAATTATTTGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTTTTTCACTTCGTCCACTGCGCACACTTTCTCCATCCATATATCACCATTT] [+] EMBL CD160645 [GTGAATTCCTAGATATGAAGCGATGCAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGATGAATTATTTGTTGGGCATATACCTGTTGTACGGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAACGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTTTTTCACTTCGTCCACTGCGCACACTTTCTCCATCCATATATCACCATTT] [+] EMBL CD146970 [ TGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTT ] [+] EMBL CD146773 [ TGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAGGGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATTGGCATTAAAGAGGGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGCTGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGACGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAAGCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTACTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGC ] consensusID : consensus_6482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [AGCCGGTACCACCATTGGCATGTATACCTAGTGAAGTTGCTAGGCCGTAACGTGCTCCAAACCGTGAGAAATTGTCACCACTGAGTCCAGTCTCACTTGTAGCGCCAGTGACAGCAGTAGCCTCCTCAACCCAAGCATTTTCATCTCGGTTTGTAAGTTGTGAGTCAAAACGCTCAGATCGGTATGGCTCAGGAACTTGTGATGATGGTTGAGAAGGTATCTGGGAAGGCGAAACGTGGGATGCAGCAGTATGTGCTAAAGGATGCTGTTGTCCAGGAGGTATGAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGG] [+] EMBL CD184589 [AGCCGGTACCACCATTGGCATGTATACCTAGTGAAGTTGCTAGGCCGTAACGTGCTCCAAACCGTGAGAAATTGTCACCACTGAGTCCAGTCTCACTTGTAGCGCCAGTGACAGCAGTAGCCTCCTCAACCCAAGCATTTTCATCTCGGTTTGTAAGTTGTGAGTCAAAACGCTCAGATCGGTATGGCTCAGGAACTTGTGATGATGGTTGAGAAGGTATCTGGGAAGGCGAAACGTGGGATGCAGCAGTATGTGCTAAAGGATGCTGTTGTCCAGGAGGTATGAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTTGATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6482#0 GTGAATTCCTAGATATGAAGCGATGCAAAGAACCGACCTGTTGTTGTTGTGACTGAAGTT 60 consensus_6482#1 -----------------AGCCGGTACCACCA-TTGGCATG----TATACCTAGTGAAGTT 38 * ** * * * * * * ** * * * ******* consensus_6482#0 GATTTGATTGTACTCCTGCACAAATTGGGGGTCGGGTGAATGGAGAAGGCATGGACGGAT 120 consensus_6482#1 G-CTAGGCCGTAACGTGCTCCAAACCGTGAG------AAATTGTCACCACTGAGTCCAGT 91 * * * *** **** * * * *** * * * * * * consensus_6482#0 GAATTATTTGTTGGGCATATACCTGTTGTACAGATTGATCGCTCCAACTTTGAGCGTTAG 180 consensus_6482#1 C--TCACTTGTAGCGCCAGTGACAGCAGTA--GCCTCCTCAACCCAAGCATTTTCATCTC 147 * * **** * ** * * * *** * * ** **** * * * consensus_6482#0 GGATGTACATGCTTGGCTGAGAACAAGAGGAGAAATTGGGATTCATT-GGCATTAAAGAG 239 consensus_6482#1 GG-TTTGTAAGTTG---TGAGTCAAAACGCTCAGATCGGTATGGCTCAGGAACTTGTGAT 203 ** * * * * * **** ** * * ** ** ** * ** * * ** consensus_6482#0 GGAATCCATGTTTCTAATGTATAAGGATGAGAATTAGGCTGTTGCATTCCCATTGGTTGC 299 consensus_6482#1 GATGGTTGAGAAGGTA-TCTGGGAAGGCGAAACGTGGGATGCAGCAGT------ATGTGC 256 * * ** * * * * ** * * ** ** *** * *** consensus_6482#0 TGTGGAAACATGCTCATATGAGGCTGTGGGACAACTGGCATCAAATTGCATTGAGATTGA 359 consensus_6482#1 TAAAGGATGCTGTTGTCCAGGAGGTATGAAAGAACCGACCTGTTGTTG--TTGTGACTGA 314 * * * ** * * * * ** * *** * * * *** *** ** *** consensus_6482#0 CGGACAACTGTATCCACATTTTGCATGCTCTGTCCAATAGCTAGTGGCTGGTTATGAGAA 419 consensus_6482#1 AGTTGATTTGATTGTAC-TCCTGCACAAATTG---GGGGTCGGGTGAATGG--AGAAGGC 368 * * ** * ** * **** ** * *** *** * ** consensus_6482#0 GCTAACACATTCTTTACTTGTCCTTGAAACATACACGCGGATTGACTGGAAGTAACATTA 479 consensus_6482#1 ATGGACGGG--------------------------------------------------- 377 ** consensus_6482#0 CTTGTCCGCTGAATGCGTTTTGACCGACGAGAACGGTCGCTTTTTTCACTTCGTCCACTG 539 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 CGCACACTTTCTCCATCCATATATCACCATTT 571 consensus_6482#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||