cluster # 6485

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Schistosoma mansoni
cluster # 6485 cluster # 6485 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6485#0 length = 617 sequences # 2

consensus_6485#1 length = 574 sequences # 1
consensus_6485#2 length = 256 sequences # 1

consensusID : consensus_6485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 617
fasta sequence

                              [ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAGGAGTATAAGATGAATTCTAAAATGGAACGCAATATTTCATCAATACAGAATTCAAATACTGTCAAGCTTGAATGTAACTGGGGAATGTCGTTAGAAGATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAACGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGAATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAACGTTTAAATCGTATGCNGTCATTANGGAGTGAAGATGATNGAA]

[+] EMBL CD149057             [ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAGGAGTATAAGATGAATTCTAAAATGGAACGCAATATTTCATCAATACAGAATTCAAATACTGTCAAGCTTGAATGTAACTGGGGAATGTCGTTAGAAGATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAACGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGAATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAACGTTTAAATCGTATGCNGTCATTANGGAGTGAAGATGATNGAA]
[+] EMBL CD148908             [ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAAGAGTATAAGATAAATTCTAAAAGGGAACGCATTATTTAATCATTACAAAATTCAAATCCGGTCAACCTTGATGGTACCTGGGGAAGGTCGTTAAAAAATCCTGTCTTTGAACCAATTCCAACTTTATTCCAACCTGAAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAACGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGA                                                                                                                                                                                                                                                                                              ]




>consensus_6485#0
ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAGGAGTATA
AGATGAATTCTAAAATGGAACGCAATATTTCATCAATACAGAATTCAAATACTGTCAAGC
TTGAATGTAACTGGGGAATGTCGTTAGAAGATCCTGTCTCTGAACCAATTCCAACTTTAT
TACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCAT
TGAATGCATATTTTGAACGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAG
CACCATTTGGAAAACAACACTGTCGAATTGAATTGCCGTTGAGTTCAGGTACCGTGACCG
CGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCAT
GTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTA
AATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATA
CTTATGTTGATCGAACTGGAGCTGTGGAGAGAAACGTTTAAATCGTATGCNGTCATTANG
GAGTGAAGATGATNGAA

consensusID : consensus_6485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [GCTGGTGAAACACTCACTGTAACCTTTGGAGGTCGCAGGTCCGATCCCTGATGACTAGGCATACTGTTGAGGAGCCCGATAATAGGCCAAAATATTTATCCAGTGCTTCCTGGTTTGTAATAGTTATTTTATTAAGATTTATCAGTGATGTTAAATATTAAATTTGTTTTAATTACTTAATATATCTTTATCTGAATAAAATTTTACGTTTTCTTTTGTCGTTATTGTTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAAACGTNTAATCGTATGCGTCAATTANGAGTGAAAGATGATGAAATTAAAACAACAAGCGAACTACTGGACAATCATAATGCTGAAATTCATCT]

[+] EMBL CD134612             [GCTGGTGAAACACTCACTGTAACCTTTGGAGGTCGCAGGTCCGATCCCTGATGACTAGGCATACTGTTGAGGAGCCCGATAATAGGCCAAAATATTTATCCAGTGCTTCCTGGTTTGTAATAGTTATTTTATTAAGATTTATCAGTGATGTTAAATATTAAATTTGTTTTAATTACTTAATATATCTTTATCTGAATAAAATTTTACGTTTTCTTTTGTCGTTATTGTTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAAACGTNTAATCGTATGCGTCAATTANGAGTGAAAGATGATGAAATTAAAACAACAAGCGAACTACTGGACAATCATAATGCTGAAATTCATCT]




>consensus_6485#1
GCTGGTGAAACACTCACTGTAACCTTTGGAGGTCGCAGGTCCGATCCCTGATGACTAGGC
ATACTGTTGAGGAGCCCGATAATAGGCCAAAATATTTATCCAGTGCTTCCTGGTTTGTAA
TAGTTATTTTATTAAGATTTATCAGTGATGTTAAATATTAAATTTGTTTTAATTACTTAA
TATATCTTTATCTGAATAAAATTTTACGTTTTCTTTTGTCGTTATTGTTACTAACAAAGA
TTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAA
GCTGTTGTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGAT
CCAGACAAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGAT
CGTGACTACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGA
AAACGTNTAATCGTATGCGTCAATTANGAGTGAAAGATGATGAAATTAAAACAACAAGCG
AACTACTGGACAATCATAATGCTGAAATTCATCT

consensusID : consensus_6485#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [GATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAGCGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGATTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAG]

[-] EMBL CD202665             [GATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAGCGAGAGGGAATTGATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGATTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAG]




>consensus_6485#2
GATCCTGTCTCTGAACCAATTCCAACTTTATTACAATCTGGAACTTGTTTAAGTCATGAA
AAATTATATCGTGATGATCCTAAACGGGCATTGAATGCATATTTTGAGCGAGAGGGAATT
GATCCTATTCCGCAGTTTGAATTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATT
GATTACTAACAAAGATTGCCGTTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCC
GGTAAACGAAAAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6485#0      ACACTGAACAGCAAACTTCACAATCTTGGTTTGATTTGAAGAAATCTCATGAGGAGTATA 60
consensus_6485#2      ------------------------------------------------------------
consensus_6485#1      ------------------------------------------------------------
                                                                                  

consensus_6485#0      AGATGAATTCTAAAATGGAACGCAATATTTCATCAATACAGAATTCAAATACTGTCAAGC 120
consensus_6485#2      ------------------------------------------------------------
consensus_6485#1      ----------------------------------------------------GCTGGTGA 8
                                                                                  

consensus_6485#0      TTGAATGTAACTGGGGAATGTCGTTAGAAGATCCTGTCTCTGA-ACCAATTCCAACTTTA 179
consensus_6485#2      -----------------------------GATCCTGTCTCTGA-ACCAATTCCAACTTTA 30
consensus_6485#1      AACACTCACTGTAACCTTTGGAGGTCGCAGGTCCGATCCCTGATGACTAGGCATACTGTT 68
                                                   * ***  ** ****   * *  *  *** * 

consensus_6485#0      TTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCA 239
consensus_6485#2      TTACAATCTGGAACTTGTTTAAGTCATGAAAAATTATATCGTGATGATCCTAAACGGGCA 90
consensus_6485#1      GAGGAGCCCGATAATAGGCCAAA--ATATTTATCCAGTGCTTCCTGGTTTGTAATAGTTA 126
                          *  * *  * * *   **   **    *   *   * *  ** *    **  *  *

consensus_6485#0      TTGAATGCATATTT-TGAACGAGAGGGAAT--------TGATCCTATTCCGCAGTTTGAA 290
consensus_6485#2      TTGAATGCATATTT-TGAGCGAGAGGGAAT--------TGATCCTATTCCGCAGTTTGAA 141
consensus_6485#1      TTTTATTAAGATTTATCAGTGATGTTAAATATTAAATTTGTTTTAATTACTTAATATATC 186
                      **  **  * **** * *  **     ***        ** *   *** *  * * *   

consensus_6485#0      TTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGA------------ATTGCCG 338
consensus_6485#2      TTTGTTGAAGCACCATTTGGAAAACAACACTGTCGAATTGATTACTAACAAAGATTGCCG 201
consensus_6485#1      TTTATCTGAATAAAATTTTACGTTTTCTTTTGTCGTTATTGTTACTAACAAAGATTGCCG 246
                      *** *   *  *  ****            *****   *              *******

consensus_6485#0      TTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTT 398
consensus_6485#2      TTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAG----- 256
consensus_6485#1      TTGAGTTCAGGTACCGTGACCGCGGAAGCTCTTGTTTCCGGTAAACGAAAAGAAGCTGTT 306
                      *******************************************************     

consensus_6485#0      GTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGAC 458
consensus_6485#2      ------------------------------------------------------------
consensus_6485#1      GTTGCTTGTGCTTTGGAAGCATGTCAACTTTTAGATCGTTTGGGTGAATTTGATCCAGAC 366
                                                                                  

consensus_6485#0      AAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGAC 518
consensus_6485#2      ------------------------------------------------------------
consensus_6485#1      AAAGATCGTTCCACCGCTTTTAAATACACTCGATCACGAGCTTATTGGGAAGATCGTGAC 426
                                                                                  

consensus_6485#0      TACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAACGTT 578
consensus_6485#2      ------------------------------------------------------------
consensus_6485#1      TACTATTCATCTGATGAAGATACTTATGTTGATCGAACTGGAGCTGTGGAGAGAAAACGT 486
                                                                                  

consensus_6485#0      TAAATCGTATGCNGTCATTANGGAGTGAAGATGATNGAA--------------------- 617
consensus_6485#2      ------------------------------------------------------------
consensus_6485#1      NTAATCGTATGCGTCAATTANGAGTGAAAGATGATGAAATTAAAACAACAAGCGAACTAC 546
                                                                                  

consensus_6485#0      ----------------------------
consensus_6485#2      ----------------------------
consensus_6485#1      TGGACAATCATAATGCTGAAATTCATCT 574