cluster # 649

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Schistosoma mansoni
cluster # 649 cluster # 649 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_649#0 length = 331 sequences # 1

consensus_649#1 length = 182 sequences # 1

consensusID : consensus_649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGAGTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACAAGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTGCACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGAAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATC]

[+] EMBL CD143243             [CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGAGTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACAAGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTGCACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGAAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATC]




>consensus_649#0
CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGA
GTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACA
AGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTG
CACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGA
AATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTT
CATGAACTTGAGCTTTGTCTAGCTTTGCATC

consensusID : consensus_649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGTTC]

[+] EMBL CD138991             [GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGTTC]




>consensus_649#1
GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGA
TCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTA
GCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGT
TC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_649#0      CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGA 60
consensus_649#1      ------------------------------------------------------------
                                                                                 

consensus_649#0      GTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACA 120
consensus_649#1      ------------------------------------------------------------
                                                                                 

consensus_649#0      AGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTG 180
consensus_649#1      ------------------------------------------------------------
                                                                                 

consensus_649#0      CACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCT-TTGCCATTANAG 239
consensus_649#1      ----------------------GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAAC 38
                                            ****        *   ******** ********* * 

consensus_649#0      AAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATT 299
consensus_649#1      AAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATT 98
                     ************* *************  ******* ** ********************

consensus_649#0      TCATGAACTTGAGCTTTGTCTAGCTTTGCATC---------------------------- 331
consensus_649#1      TCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAA 158
                     ********************************                            

consensus_649#0      ------------------------
consensus_649#1      GTGCCACGGAAAACATCTGCGTTC 182