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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 649 cluster # 649       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_649#0 length = 331 sequences # 1  
consensus_649#1 length = 182 sequences # 1  

consensusID : consensus_649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence
                              [CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGAGTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACAAGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTGCACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGAAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATC]

[+] EMBL CD143243             [CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGAGTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACAAGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTGCACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGAAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATC]


>consensus_649#0 CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGA GTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACA AGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTG CACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGA AATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTT CATGAACTTGAGCTTTGTCTAGCTTTGCATC



consensusID : consensus_649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence
                              [GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGTTC]

[+] EMBL CD138991             [GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGTTC]


>consensus_649#1 GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGA TCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTA GCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGT TC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_649#0      CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGA 60
consensus_649#1      ------------------------------------------------------------
                                                                                 

consensus_649#0      GTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACA 120
consensus_649#1      ------------------------------------------------------------
                                                                                 

consensus_649#0      AGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTG 180
consensus_649#1      ------------------------------------------------------------
                                                                                 

consensus_649#0      CACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCT-TTGCCATTANAG 239
consensus_649#1      ----------------------GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAAC 38
                                            ****        *   ******** ********* * 

consensus_649#0      AAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATT 299
consensus_649#1      AAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATT 98
                     ************* *************  ******* ** ********************

consensus_649#0      TCATGAACTTGAGCTTTGTCTAGCTTTGCATC---------------------------- 331
consensus_649#1      TCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAA 158
                     ********************************                            

consensus_649#0      ------------------------
consensus_649#1      GTGCCACGGAAAACATCTGCGTTC 182
                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)