These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGAGTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACAAGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTGCACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGAAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATC] [+] EMBL CD143243 [CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGAGTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACAAGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTGCACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCTTTGCCATTANAGAAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATC] consensusID : consensus_649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGTTC] [+] EMBL CD138991 [GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAACAAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATTTCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAAGTGCCACGGAAAACATCTGCGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_649#0 CAGAGTATGTAGTGAAAGTCTGAGTTTGTTTTGTTGGAATGGTTGTATTTCTCTTGATGA 60 consensus_649#1 ------------------------------------------------------------ consensus_649#0 GTGCAGTCATTACACCTCCAGCTGTTTCAATACCAAGTGAAAGGGGTGCAACATCCAACA 120 consensus_649#1 ------------------------------------------------------------ consensus_649#0 AGAGTAAGTCCTGCACCTCTTCTGACTTGTCACCATGGAGAATAGCAGCCTGGACAGCTG 180 consensus_649#1 ------------------------------------------------------------ consensus_649#0 CACCATAAGCTACTGCTTCATCAGGGTTGATGCTCTTGTTCAATTCT-TTGCCATTANAG 239 consensus_649#1 ----------------------GGGGTATGCATCTTGCCTCAATTCTGTTGCCATTAAAC 38 **** * ******** ********* * consensus_649#0 AAATCTTGGAGCAGCTTCTGGATCTTGNNGATACGAGTAGAACCACCTACAAGTACAATT 299 consensus_649#1 AAATCTTGGAGCACCTTCTGGATCTTGGGGATACGATTATAACCACCTACAAGTACAATT 98 ************* ************* ******* ** ******************** consensus_649#0 TCATGAACTTGAGCTTTGTCTAGCTTTGCATC---------------------------- 331 consensus_649#1 TCATGAACTTGAGCTTTGTCTAGCTTTGCATCTCTCAAGGATTTCTCTACAGGTTCTAAA 158 ******************************** consensus_649#0 ------------------------ consensus_649#1 GTGCCACGGAAAACATCTGCGTTC 182 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||