These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 803 fasta sequence [AAAACCACCAGGAGTTTGTGAGCGAGGAACATTCGACCTTTGTGGTGGTGTGTACTGAGGATGTCGAAGAATTCGCTGAGCACGCTTCTGATTCTGTGCATTAGCCGCATTGGGAAAAGTGGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTTAGCTGATTTAGGGGTGTCGCCCTCATCATCGACTAAGCGGGGCTTCTTTAATGGCGCAGGAATTGAGCTGGGAACGGTGTAGTACGTTAGTAAGAAAGTTAAATTTCCAAAAACCCAAAAGATCACTATCTTTTCAGTTTATTAGTTTAGTTAAATAATAAAATTATCATAACAATAAAATGAATAGAACCAACATTCAGAACTAACTGAACGCTAATCTACTACTTCCTTATCTAAATTATATCGAATGTTTGTAAAAAACTGCTACTACTACTGGGAATTATCTATAGTGACATATCACTTGAATTACTACGTACTATGGATGATGAAGCCATGTGTAGTAAATACAGTAACTTATCCTACCACACGGATGGGAAAGCAAAACCCTTAGAATGCAAAGCAACATGACGTTCTGTCTAACCTACTACCTGAAAAACAGCTTATTAGTTTTCAGCTTACTTAAGACAAATACCGCCACTAGTTTGTCACCATATTAAAATATACAATGCTTATGTTGTTTACTAGGTTTGAATAAAAGCTTACAATAATGTAAATATGATTTACCTATTAATCAGATTAATAAAAAGGTTTAAAATTTCGAAACAAAGGTTAAAAAATCTGAC] [+] EMBL CD158949 [AAAACCACCAGGAGTTTGTGAGCGAGGAACATTCGACCTTTGTGGTGGTGTGTACTGAGGATGTCGAAGAATTCGCTGAGCACGCTTCTGATTCTGTGCATTAGCCGCATTGGGAAAAGTGGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTTAGCTGATTTAGGGGTGTCGCCCTCATCATCG ] [+] EMBL CD186729 [ ATTAGCCGCATTGGGAAAAGTGGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTTAGCTGATTTAGGGGTGTCGCCCTCATCATCGACTAAGCGGGGCTTCTTTAATGGCGCAGGAATTGAGCTGGGAACGGTGTAGTACGTTAGTAAGAAAGTTAAATTTCCAAAAACCCAAAAGATCACTATCTTTTCAGTTTATTAGTTTAGTTAAATAATAAAATTATCATAACAATAAAATGAATAGAACCAACATTCAGAACTAACTGAACGCTAATCTACTACTTCCTTATCTAAATTATATCGAATGTTTGTAAAAAACTGCTACTACTACTGGGAATTATCTATAGTGACATATCACTTGAATTACTACGTACTATGGATGATGAAGCCATGTGTAGTAAA ] [+] EMBL CD141932 [ TAGTGACATATCACTTGAATTACTACGTACTATGGATGATGAAGCAATGTTAAGTAAATACAGTAACTTATCCTACCACACGGATGGGAAAGCAAAACCCTTAGAATGCAAAGCAACATGACGTTCTGTCTAACCTACTACCTGAAAAACAGCTTATTAGTTTTCAGCTTACTTAAGACAAATACCGCCACTAGTTTGTCACCATATTAAAATATACAATGCTTATGTTGTTTACTAGGTTTGAATAAAAGCTTACAATAATGTAAATATGATTTACCTATTAATCAGATTAATAAAAAGGTTTAAAATTTCGAAACAAAGGTTAAAAAATCTGAC] consensusID : consensus_6490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [AAACACTTGAGTAAATATCAGCGAGCGAAATGAAAATGACATGCATTGGAGATGGCGGGTAAACCAACTCATTTTAAGCAAGCGTTAATCAATATTTATAGTCAGACAAGAATAAATGACAGACATGTGATAAATAGGATAAGAAGGGTACACACAACTACGCTCATACAAAAATGGTCAATATTAATAAGTGAATAATTAACAAGATCAAAATATGACTCATAATGGAAAAGAGAATTGGCTTGTCCAGAAGCTAGAATAAAGTATATGGGCTTACCATATAAACTGATACTACAAAGCAGTGACCAGTGGAGTTCAACCAGGTCTGTTGTGAGATAGGAACTCACTGAAGACGATTGGTGAACGATTGCTCAACTTCGTGAATTGGTTGAAGCTAGACATTAATACCACTTGATGCCGGCTCAGTGGTTTAATGGTTAAGCGATAGCTCGCGAGACTGAT] [+] EMBL CD170802 [AAACACTTGAGTAAATATCAGCGAGCGAAATGAAAATGACATGCATTGGAGATGGCGGGTAAACCAACTCATTTTAAGCAAGCGTTAATCAATATTTATAGTCAGACAAGAATAAATGACAGACATGTGATAAATAGGATAAGAAGGGTACACACAACTACGCTCATACAAAAATGGTCAATATTAATAAGTGAATAATTAACAAGATCAAAATATGACTCATAATGGAAAAGAGAATTGGCTTGTCCAGAAGCTAGAATAAAGTATATGGGCTTACCATATAAACTGATACTACAAAGCAGTGACCAGTGGAGTTCAACCAGGTCTGTTGTGAGATAGGAACTCACTGAAGACGATTGGTGAACGATTGCTCAACTTCGTGAATTGGTTGAAGCTAGACATTAATACCACTTGATGCCGGCTCAGTGGTTTAATGGTTAAGCGATAGCTCGCGAGACTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6490#0 AAAACCACCAGGAGTTTGTGAGCGAGGAACATTCGACCTTTGTGGTGGTGTGTACTGAGG 60 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 ATGTCGAAGAATTCGCTGAGCACGCTTCTGATTCTGTGCATTAGCCGCATTGGGAAAAGT 120 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 GGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTT 180 consensus_6490#1 -----------------AAACACTTGAGTAAATATCAGCGAGCGAAATGAAAATGACATG 43 * * * * *** * * * * *** * consensus_6490#0 AGCTGATTTAGGGGTGTCGCCCTCATCATCGACTAAGCGGGGCTTCTTTAATGGCGCAGG 240 consensus_6490#1 CATTGGAGATGGCGGGTAAACCAACTCATT--TTAAGCAAGCGTTAATCAATATT--TAT 99 ** ** * ** ** **** ***** * ** * *** consensus_6490#0 AATTGAGCTGGGAACGGTGTAGTACGT-TAGTAAGAAAGTTAAATTTCCAAAAACCCAAA 299 consensus_6490#1 AGTCAGACAAGAATAAATGACAGACATGTGATAAATAGGATAAG-----AAGGGTACACA 154 * * * * * ** ** * * *** * * *** ** ** * consensus_6490#0 AGATCACTATCTTTTCAGTTTA-TTAGTTTAGTTAAATAATAAAATTATCATAACAATAA 358 consensus_6490#1 CAACTACGCTCATACAAAAATGGTCAATATTAATAAGTGA-ATAATTAACAAGATCAAAA 213 * ** ** * * * * * * * *** * * * ***** ** * * ** consensus_6490#0 AATGAATAGAACCAACATTCAGAACTAACTGAACGCTAATCTACTACTTCCTTATCTAAA 418 consensus_6490#1 TATGACTCATAATGGAAAAGAGAATTGGCTTGTCCAGAAGCTAGAA----------TAAA 263 **** * * * **** * ** * ** *** * **** consensus_6490#0 TTATATCGAATGTTTGTAAAAAACTGCTACTACTACTGGGAATTATCTATAGTGACATAT 478 consensus_6490#1 GTATATGGGCTTACCATATAAA-CTGATACTACAA--AGCAGTGACC---AGTGGAGTTC 317 ***** * * ** *** *** ****** * * * * * * **** * consensus_6490#0 CACTTGAATTACTACGTACTATGGATGATGAAGCCATGTGTAGTAAATACAGTAACTTAT 538 consensus_6490#1 AACCAGGTCTGTTGTGAGATAGGAACTCACTGAAGACGATTGGTGA--ACGATTGCTCAA 375 ** * * * * ** * * * * * ** * ** * ** * consensus_6490#0 CCTACCACACGGATGGGAAAGCAAAACCCTTAGAATGCAAAGCAACATGACGTTCTGTCT 598 consensus_6490#1 CTTCGTGAATTGGTTG--AAGCTAGACATT---AATACCACTTGATGCCG-GCTCAGT-- 427 * * * * * * **** * ** * *** * * * * ** ** consensus_6490#0 AACCTACTACCTGAAAAACAGCTTATTAGTTTTCAGCTTACTTAAGACAAATACCGCCAC 658 consensus_6490#1 GGTTTAATGGTTAAGCGATAGCTCGCGAGACTGAT------------------------- 462 ** * * * * **** ** * consensus_6490#0 TAGTTTGTCACCATATTAAAATATACAATGCTTATGTTGTTTACTAGGTTTGAATAAAAG 718 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 CTTACAATAATGTAAATATGATTTACCTATTAATCAGATTAATAAAAAGGTTTAAAATTT 778 consensus_6490#1 ------------------------------------------------------------ consensus_6490#0 CGAAACAAAGGTTAAAAAATCTGAC 803 consensus_6490#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||